def test_status_setter_error(self):
pd = ProcessedData(1)
pd.status = 'public'
self.assertEqual(pd.status, 'public')
with self.assertRaises(QiitaDBStatusError):
pd.status = 'sandbox'
def test_status(self):
rd = RawData(1)
s = Study(1)
self.assertEqual(rd.status(s), 'private')
# Since the status is inferred from the processed data, change the
# status of the processed data so we can check how it changes in the
# preprocessed data
pd = ProcessedData(1)
pd.status = 'public'
self.assertEqual(rd.status(s), 'public')
# Check that new raw data has sandbox as status since no
# processed data exists for them
rd = RawData.create(self.filetype, self.studies, self.filepaths)
self.assertEqual(rd.status(s), 'sandbox')
def test_status(self):
ppd = PreprocessedData(1)
self.assertEqual(ppd.status, 'private')
# Since the status is inferred from the processed data, change the
# status of the processed data so we can check how it changes in the
# preprocessed data
pd = ProcessedData(1)
pd.status = 'public'
self.assertEqual(ppd.status, 'public')
# Check that new preprocessed data has sandbox as status since no
# processed data exists for them
ppd = PreprocessedData.create(self.study, self.params_table,
self.params_id, self.filepaths,
data_type="16S")
self.assertEqual(ppd.status, 'sandbox')
def make_sandbox(self, study, user, callback):
"""Reverts the current study to the 'sandbox' status
Parameters
----------
study : Study
The current study object
user : User
The current user object
callback : function
The callback function to call with the results once the processing
is done
"""
pd_id = int(self.get_argument('pd_id'))
pd = ProcessedData(pd_id)
pd.status = 'sandbox'
msg = "Processed data reverted to sandbox"
msg_level = "success"
callback((msg, msg_level, "processed_data_tab", pd_id, None))
def request_approval(self, study, user, callback):
"""Changes the status of the current study to "awaiting_approval"
Parameters
----------
study : Study
The current study object
user : User
The current user object
callback : function
The callback function to call with the results once the processing
is done
"""
pd_id = int(self.get_argument('pd_id'))
pd = ProcessedData(pd_id)
pd.status = 'awaiting_approval'
msg = "Processed data sent to admin for approval"
msg_level = "success"
callback((msg, msg_level, "processed_data_tab", pd_id, None))
def make_public(self, study, user, callback):
"""Makes the current study public
Parameters
----------
study : Study
The current study object
user : User
The current user object
callback : function
The callback function to call with the results once the processing
is done
"""
pd_id = int(self.get_argument('pd_id'))
pd = ProcessedData(pd_id)
pd.status = 'public'
msg = "Processed data set to public"
msg_level = "success"
callback((msg, msg_level, "processed_data_tab", pd_id, None))
def test_delete(self):
"""Correctly deletes a processed data"""
# testing regular delete
pd = ProcessedData.create(self.params_table, self.params_id,
self.filepaths,
preprocessed_data=self.preprocessed_data,
processed_date=self.date)
ProcessedData.delete(pd.id)
# testing that it raises an error if ID doesn't exist
with self.assertRaises(QiitaDBUnknownIDError):
ProcessedData.delete(pd.id)
# testing that we can not remove cause the processed data != sandbox
with self.assertRaises(QiitaDBStatusError):
ProcessedData.delete(1)
# testing that we can not remove cause processed data has analyses
pd = ProcessedData(1)
pd.status = 'sandbox'
with self.assertRaises(QiitaDBError):
ProcessedData.delete(1)
def approve_study(self, study, user, callback):
"""Approves the current study if and only if the current user is admin
Parameters
----------
study : Study
The current study object
user : User
The current user object
callback : function
The callback function to call with the results once the processing
is done
"""
if _approve(user.level):
pd_id = int(self.get_argument("pd_id"))
pd = ProcessedData(pd_id)
pd.status = "private"
msg = "Processed data approved"
msg_level = "success"
else:
msg = "The current user does not have permission to approve " "the processed data"
msg_level = "danger"
callback((msg, msg_level, "processed_data_tab", pd_id, None))
def test_status_setter_error_not_existant(self):
pd = ProcessedData(1)
with self.assertRaises(IncompetentQiitaDeveloperError):
pd.status = 'does-not-exist'
def test_status_setter(self):
pd = ProcessedData(1)
self.assertEqual(pd.status, 'private')
pd.status = 'sandbox'
self.assertEqual(pd.status, 'sandbox')
def test_status_setter_error_not_existant(self):
pd = ProcessedData(1)
with self.assertRaises(QiitaDBLookupError):
pd.status = 'does-not-exist'
