def write_fasta_ordered(filename, names, seqs, width=None):
"""Write a FASTA in array style to a file"""
out = util.open_stream(filename, "w")
for name, seq in izip(names, seqs):
print >> out, ">%s" % name
util.printwrap(seq, width, out=out)
def write_fasta_ordered(filename, names, seqs, width=None):
"""Write a FASTA in array style to a file"""
out = util.open_stream(filename, "w")
for name, seq in izip(names, seqs):
print >>out, ">%s" % name
util.printwrap(seq, width, out=out)
def write(self, filename=sys.stdout, names=None, width=80):
"""Write sequences in Fasta format"""
out = util.open_stream(filename, "w")
if names is None:
names = self.names
for key in names:
print >> out, ">" + key
util.printwrap(self[key], width, out=out)
def write(self, filename=sys.stdout, names=None, width=80):
"""Write sequences in Fasta format"""
out = util.open_stream(filename, "w")
if names is None:
names = self.names
for key in names:
print >>out, ">" + key
util.printwrap(self[key], width, out=out)
