def makeRaster(self):
shape = self.mosaicimage.shape
spacing = self.settings['raster spacing']
angledeg = self.settings['raster angle']
anglerad = math.radians(angledeg)
rasterpoints = raster.createRaster(shape, spacing, anglerad)
if self.settings['autofinder']:
self.regionarrays=[]
else:
#if self.regionarrays is not defined, make it an empty array
try:
len(self.regionarrays)
except TypeError:
self.regionarrays=[]
# if self.regionarrays is empty, check for manually picked region
if (len(self.regionarrays) < 1 and self.settings['find section options']!='Regions from Centers') or not self.settings['autofinder']:
manualregion = self.panel.getTargetPositions('region')
if manualregion:
manualregion = self.transpose_points(manualregion)
manualregionarray = numpy.array(manualregion)
self.regionarrays = [manualregionarray]
if len(self.regionarrays) > 0:
rasterpoints = self.insideRegionArrays(rasterpoints,spacing)
else:
if self.regionimage is not None:
rasterpoints = self.insideRegionImage(rasterpoints)
fullrasterdisplay = self.transpose_points(rasterpoints)
self.setTargets(fullrasterdisplay, 'acquisition', block=True)
def makeRaster(self):
shape = self.mosaicimage.shape
spacing = self.settings['raster spacing']
angledeg = self.settings['raster angle']
anglerad = math.radians(angledeg)
rasterpoints = raster.createRaster(shape, spacing, anglerad)
if self.settings['autofinder']:
self.regionarrays = []
else:
#if self.regionarrays is not defined, make it an empty array
try:
len(self.regionarrays)
except TypeError:
self.regionarrays = []
# if self.regionarrays is empty, check for manually picked region
if (len(self.regionarrays) < 1
and self.settings['find section options'] !=
'Regions from Centers') or not self.settings['autofinder']:
manualregion = self.panel.getTargetPositions('region')
if manualregion:
manualregion = self.transpose_points(manualregion)
manualregionarray = numpy.array(manualregion)
self.regionarrays = [manualregionarray]
if len(self.regionarrays) > 0:
rasterpoints = self.insideRegionArrays(rasterpoints, spacing)
else:
if self.regionimage is not None:
rasterpoints = self.insideRegionImage(rasterpoints)
fullrasterdisplay = self.transpose_points(rasterpoints)
self.setTargets(fullrasterdisplay, 'acquisition', block=True)
def makeRaster(self):
shape = self.currentimagedata['image'].shape
spacing = self.settings['raster spacing']
angledeg = self.settings['raster angle']
anglerad = math.radians(angledeg)
rasterpoints = raster.createRaster(shape, spacing, anglerad)
regionrasters = []
fullrasterset = set()
for region in self.regionarrays:
regionraster = polygon.pointsInPolygon(rasterpoints, region)
regionrasters.append(regionraster)
fullrasterset = fullrasterset.union(regionraster)
# set is unordered, so use original rasterpoints for order
self.fullraster = []
for point in rasterpoints:
if point in fullrasterset:
self.fullraster.append(point)
fullrasterdisplay = self.transpose_points(self.fullraster)
self.setTargets(fullrasterdisplay, 'acquisition', block=False)
def makeRaster(self): shape = self.currentimagedata['image'].shape spacing = self.settings['raster spacing'] angledeg = self.settings['raster angle'] anglerad = math.radians(angledeg) rasterpoints = raster.createRaster(shape, spacing, anglerad) regionrasters = [] fullrasterset = set() for region in self.regionarrays: regionraster = polygon.pointsInPolygon(rasterpoints, region) regionrasters.append(regionraster) fullrasterset = fullrasterset.union(regionraster) # set is unordered, so use original rasterpoints for order self.fullraster = [] for point in rasterpoints: if point in fullrasterset: self.fullraster.append(point) fullrasterdisplay = self.transpose_points(self.fullraster) self.setTargets(fullrasterdisplay, 'acquisition', block=False)
