def get_all_assembly_name_tuples(cls):
assembly_list = []
for assembly in ReleaseUtils.get_all_assembly_names():
assembly_list.append((assembly, assembly))
return assembly_list
def get_all_assembly_release_name_tuples(cls,
assembly_name=None,
source_name=None):
assembly_release_list = []
for assembly_name in ReleaseUtils.get_all_assembly_names():
for release in ReleaseUtils.get_all_release_short_names(
assembly_name, source_name):
assembly_release_list.append(
(str(assembly_name) + ":" + str(release),
str(assembly_name) + ":" + str(release)))
return assembly_release_list
def test_get_all_assembly_names(self):
all_assemblies = ReleaseUtils.get_all_assembly_names()
expected_list = ['GRCh37', 'GRCh38']
self.assertListEqual(all_assemblies, expected_list,
"Got the right assembly list")