def test3(self):
'''some special properties'''
palette = [
colors.CMYKColorSep(0.6, 0.34, 0, 0.1, spotName='625C', density=1),
colors.CMYKColorSep(0.13,
0.51,
0.87,
0.48,
spotName='464c',
density=1),
]
canv = canvas.Canvas(
'test_pdfgen_general_spots.pdf',
pagesize=(346, 102),
)
canv.setLineWidth(1)
canv.setStrokeColor(colors.CMYKColor(0, 0, 0, 1))
x = 10
y = 10
for c in palette:
c.density = 1.0
canv.setFillColor(c)
canv.setFont('Helvetica', 20)
canv.drawString(x, 80, 'This is %s' % c.spotName)
canv.setFont('Helvetica', 6)
canv.rect(x, y, 50, 50, fill=1)
canv.setFillColor(c.clone(density=0.5))
canv.rect(x + 55, y, 20, 20, fill=1)
canv.setFillColor(colors.CMYKColor(0, 0, 1, 0))
canv.rect(x + 80, y, 30, 30, fill=1)
canv.rect(x + 120, y, 30, 30, fill=1)
alpha = c is palette[0] and 1 or 0.5
op = c is palette[0] and True or False
canv.setFillAlpha(alpha)
canv.setFillColor(colors.CMYKColor(1, 0, 0, 0))
canv.drawString(x + 80 + 1, y + 3, 'OP=%d' % int(False))
canv.drawString(x + 80 + 1, y + 23, 'Alpha=%.1f' % alpha)
canv.rect(x + 90, y + 10, 10, 10, fill=1)
canv.setFillOverprint(op)
canv.drawString(x + 120 + 1, y + 3, 'OP=%d' % int(op))
canv.drawString(x + 120 + 1, y + 23, 'Alpha=%.1f' % alpha)
canv.rect(x + 130, y + 10, 10, 10, fill=1)
canv.setFillAlpha(1)
canv.setFillOverprint(False)
x += canv._pagesize[0] * 0.5
canv.showPage()
canv.save()
SeqFeature(FeatureLocation(centromeres[j][1],
centromeres[j][2],
strand=direc),
type='gene',
id=j,
qualifiers={'locus_tag': [centromeres[j][4]]}))
## telomere length - rounded ends of chromosome size
max_len = max(lengths)
telomere_length = 40000
chr_diagram = BasicChromosome.Organism()
#chr_diagram.page_size = (60*cm, 21*cm)
chr_diagram.page_size = (40 * cm, 21 * cm)
fill = colours.CMYKColorSep(0.4, 0, 0, 0.3, density=0.4, spotName='PMS_7496')
for index, (name, length) in enumerate(entries):
if length > 80000:
features = []
for i in acclis1:
for f in genome[name].features:
if f.id == i:
f.qualifiers['color'] = [2]
features += [f]
for i in cent_list:
for f in genome[name].features:
if f.id == i:
f.qualifiers['color'] = ["grey"]
features += [f]
if len(sys.argv) == 4: