def deserialize_contact(data, persistent=False):
"""
Transforms data (as JSON string or a dict) to a contact object
"""
if not data:
return None
if not persistent:
pass # TODO if necessary
else:
from repository.models import Contact
from vocabulary.models import CountryCode
if isinstance(data, basestring):
data = DictKeyAttribute(simplejson.loads(data))
elif isinstance(data, dict):
data = DictKeyAttribute(data)
try:
obj = Contact.objects.get(pk=data.pk)
except Contact.DoesNotExist:
obj = Contact()
obj.id = data.pk
obj.firstname = data.firstname
obj.middlename = data.middlename
obj.lastname = data.lastname
obj.email = data.email
obj.affiliation = deserialize_institution(data.affiliation, True)
obj.address = data.address
obj.city = data.city
obj.country = deserialize_vocabulary(data.country, True,
CountryCode)
obj.zip = data.zip
obj.telephone = data.telephone
obj.creator = deserialize_user(data.creator, True)
obj.save()
return obj
def deserialize_contact(data, persistent=False):
"""
Transforms data (as JSON string or a dict) to a contact object
"""
if not data:
return None
if not persistent:
pass # TODO if necessary
else:
from repository.models import Contact
from vocabulary.models import CountryCode
if isinstance(data, basestring):
data = DictKeyAttribute(simplejson.loads(data))
elif isinstance(data, dict):
data = DictKeyAttribute(data)
try:
obj = Contact.objects.get(pk=data.pk)
except Contact.DoesNotExist:
obj = Contact()
obj.id = data.pk
obj.firstname = data.firstname
obj.middlename = data.middlename
obj.lastname = data.lastname
obj.email = data.email
obj.affiliation = deserialize_institution(data.affiliation, True)
obj.address = data.address
obj.city = data.city
obj.country = deserialize_vocabulary(data.country, True, CountryCode)
obj.zip = data.zip
obj.telephone = data.telephone
obj.creator = deserialize_user(data.creator, True)
obj.save()
return obj
def set_trial_children(self, ct, fields):
_vocabularies = {'decs':'DeCS',
'icd10':'ICD-10'}
for country in fields.get('recruitment_country', []):
if country.get('label', None):
country_obj, new = CountryCode.objects.get_or_create(
label=country['label'],
defaults={'description': country.get('description', '')},
)
else:
country_obj = CountryCode.objects.get(description=country['description'])
ct.recruitment_country.add(country_obj)
for person in fields.get('persons', []):
contact = Contact.objects.filter(email=person['email'], creator=self.creator)
if contact:
contact = contact[0]
else:
contact = Contact()
contact.creator = self.creator
contact.firstname = person.get('firstname')
contact.middlename = person.get('middlename')
contact.lastname = person.get('lastname')
contact.address = person.get('address')
contact.city = person.get('city')
if person.get('country_code', None):
if person['country_code'].get('label', None):
contact.country = CountryCode.objects.get(label=person['country_code']['label'])
else:
contact.country = CountryCode.objects.get(description=person['country_code']['description'])
contact.zip = person.get('zip')
contact.telephone = person.get('telephone')
contact.email = person.get('email')
if person.get('affiliation', None):
contact.affiliation = self.get_instituion_from_db(person['affiliation'])
contact.save()
for item in fields.get('public_contact', []):
if item.get('pid', None):
try:
contact = Contact.objects.get(pk=item['pid'])
except Contact.DoesNotExist:
contact = Contact.objects.filter(email=person['email'], creator=self.creator)[0]
else:
contact = Contact.objects.filter(email=person['email'], creator=self.creator)[0]
PublicContact.objects.get_or_create(trial=ct, contact=contact)
for item in fields.get('scientific_contact', []):
if item.get('pid', None):
try:
contact = Contact.objects.get(pk=item['pid'])
except Contact.DoesNotExist:
contact = Contact.objects.filter(email=person['email'], creator=self.creator)[0]
else:
contact = Contact.objects.filter(email=person['email'], creator=self.creator)[0]
ScientificContact.objects.get_or_create(trial=ct, contact=contact)
for item in fields.get('site_contact', []):
if item.get('pid', None):
try:
contact = Contact.objects.get(pk=item['pid'])
except Contact.DoesNotExist:
contact = Contact.objects.filter(email=person['email'], creator=self.creator)[0]
else:
contact = Contact.objects.filter(email=person['email'], creator=self.creator)[0]
SiteContact.objects.get_or_create(trial=ct, contact=contact)
TrialNumber.objects.get_or_create(
trial=ct,
issuing_authority=fields.get('reg_name', ''),
id_number=fields['trial_id'],
)
for item in fields.get('secondary_ids', []):
TrialNumber.objects.get_or_create(
trial=ct,
issuing_authority=item.get('issuing_authority', ''),
id_number=item['sec_id'],
)
for item in fields.get('secondary_sponsors', []):
inst = self.get_instituion_from_db(item)
TrialSecondarySponsor.objects.get_or_create(trial=ct, institution=inst)
for item in fields.get('source_support', []):
inst = self.get_instituion_from_db(item)
TrialSupportSource.objects.get_or_create(trial=ct, institution=inst)
#TODO! This try-except shoud be refactored, its is used in several places
for item in fields.get('primary_outcomes', []):
outcome, new = Outcome.objects.get_or_create(trial=ct, interest='primary', description=item['value'])
for trans in item.get('translations', []):
try:
trans = outcome.translations.get(language=trans['lang'], description=trans['value'])
except outcome.translations.model.DoesNotExist:
trans = outcome.translations.model(language=trans['lang'], description=trans['value'])
trans.content_object = outcome
trans.save()
for item in fields.get('secondary_outcomes', []):
outcome, new = Outcome.objects.get_or_create(trial=ct, interest='secondary', description=item['value'])
for trans in item.get('translations', []):
try:
trans = outcome.translations.get(language=trans['lang'], description=trans['value'])
except outcome.translations.model.DoesNotExist:
trans = outcome.translations.model(language=trans['lang'], description=trans['value'])
trans.content_object = outcome
trans.save()
for item in fields.get('hc_codes', []):
descriptor, new = Descriptor.objects.get_or_create(
trial=ct,
aspect='HealthCondition',
level='general',
vocabulary=_vocabularies[item.get('vocabulary', 'decs')], # FIXME
code=item['code'],
defaults={
'version': item.get('version', ''),
'text': item.get('value', ''),
}
)
for trans in item.get('translations', []):
trans_obj = descriptor.translations.get_translation_for_object(trans['lang'], descriptor, create_if_not_exist=True)
trans_obj.text=trans['value']
trans_obj.save()
for item in fields.get('hc_keywords', []):
descriptor, new = Descriptor.objects.get_or_create(
trial=ct,
aspect='HealthCondition',
level='specific',
vocabulary=_vocabularies[item.get('vocabulary', 'decs')], # FIXME
code=item['code'],
defaults={
'version': item.get('version', ''),
'text': item.get('value', ''),
}
)
for trans in item.get('translations', []):
trans_obj = descriptor.translations.get_translation_for_object(trans['lang'], descriptor, create_if_not_exist=True)
trans_obj.text=trans['value']
trans_obj.save()
for item in fields.get('i_codes', []):
i_code, new = InterventionCode.objects.get_or_create(label=item['value'])
ct.i_code.add(i_code)
for item in fields.get('i_keywords', []):
descriptor, new = Descriptor.objects.get_or_create(
trial=ct,
aspect='Intervention',
level='general',
vocabulary=_vocabularies[item.get('vocabulary', 'decs')], # FIXME
code=item['code'],
defaults={
'version': item.get('version', ''),
'text': item.get('value', ''),
}
)
for trans in item.get('translations', []):
trans_obj = descriptor.translations.get_translation_for_object(trans['lang'], descriptor, create_if_not_exist=True)
trans_obj.text=trans['value']
trans_obj.save()