if kegg_id is not None:
node_colors[kegg_id] = cmap(color(dsi.data[0, n]))
with open(os.path.join(_pathomx_tempdir, 'kegg-pathway-data.txt'), 'w') as tmp:
tmp.write('#hsa\tData\n')
for k, c in list(node_colors.items()):
tmp.write('%s\t%s\n' % (k, c[0]))
m = MultipartEncoder(
fields={
'map': config['kegg_pathway_id'],
'mapping_list': ('filename', open(os.path.join(_pathomx_tempdir, 'kegg-pathway-data.txt'), 'r')),
'mode': 'color',
'submit': 'Exec',
}
)
r = requests.post(url, data=m, headers={'Content-Type': m.content_type})
html = r.text
from pathomx.displayobjects import Html # We've got the html page; pull out the image
# <img src="/tmp/mark_pathway13818418802193/hsa05200.1.png" name="pathwayimage" usemap="#mapdata" border="0" />
m = re.search('\<img src="(.*)" name="pathwayimage"', html)
img = m.group(1)
m = re.search('^KEGG PATHWAY: (.*)$', html, flags=re.MULTILINE)
title = m.group(1)
output_html = '<html><body><img src="http://www.kegg.jp%s"></body></html>' % img
View = Html(output_html)
tmp.write('#hsa\tData\n')
for k, c in list(node_colors.items()):
tmp.write('%s\t%s\n' % (k, c[0]))
m = MultipartEncoder(
fields={
'map':
config['kegg_pathway_id'],
'mapping_list':
('filename',
open(os.path.join(_pathomx_tempdir, 'kegg-pathway-data.txt'), 'r')),
'mode':
'color',
'submit':
'Exec',
})
r = requests.post(url, data=m, headers={'Content-Type': m.content_type})
html = r.text
from pathomx.displayobjects import Html # We've got the html page; pull out the image
# <img src="/tmp/mark_pathway13818418802193/hsa05200.1.png" name="pathwayimage" usemap="#mapdata" border="0" />
m = re.search('\<img src="(.*)" name="pathwayimage"', html)
img = m.group(1)
m = re.search('^KEGG PATHWAY: (.*)$', html, flags=re.MULTILINE)
title = m.group(1)
output_html = '<html><body><img src="http://www.kegg.jp%s"></body></html>' % img
View = Html(output_html)
