def isotope(name):
if request.method == 'GET':
return getIsotope(name)
elif request.method == 'POST':
# TODO: createdBy should be from the authorization token, need to change this
try:
isotopeDict = IsotopeSchema().load(request.get_json())
except ValidationError:
result = StandardResponse("Invaild Isotope Parameters")
response = StandardResponseSchema().dump(result)
return jsonify(response), 400
return createIsotope(isotopeDict)
elif request.method == 'PUT':
# TODO: createdBy should be from the authorization token, need to change this
try:
newIsotopeDict = IsotopeSchema().load(request.get_json())
except ValidationError:
result = StandardResponse("Invaild Isotope Parameters")
response = StandardResponseSchema().dump(result)
return jsonify(response), 400
return updateIsotope(name, newIsotopeDict)
elif request.method == 'DELETE':
return deleteIsotope(name)
def effectCalc():
if request.method == 'GET':
nobs = request.args.get('nobs')
power = request.args.get('power')
alpha = request.args.get('alpha')
test = request.args.get('test')
alternative = request.args.get('alternative')
try:
statisticFormDict = StatisticFormSchema().load({
'nobs':
nobs,
'power':
power,
'alpha':
alpha,
'test':
test,
'alternative':
alternative
})
result = calcEffect(statisticFormDict)
except ValidationError as e:
result = StandardResponse(e.__str__())
response = StandardResponseSchema().dump(result)
return jsonify(response), 400
except Exception as e:
result = StandardResponse(e.__str__())
response = StandardResponseSchema().dump(result)
return jsonify(response), 500
response = StatisticFormResponseSchema().dump({'result': result})
return jsonify(response), 200
def logout():
if request.method == 'DELETE':
try:
logoutHelper()
except BaseException as e:
result = StandardResponse(e.message)
response = StandardResponseSchema().dump(result)
return jsonify(response), 500
result = StandardResponse("success")
response = StandardResponseSchema().dump(result)
return jsonify(response), 200
def powerCalcTable():
if request.method == 'GET':
effect = request.args.get('effect')
nobs = request.args.get('nobs')
alpha = request.args.get('alpha')
test = request.args.get('test')
alternative = request.args.get('alternative')
try:
statisticFormDict = StatisticFormSchema().load({
'effect':
effect,
'nobs':
nobs,
'alpha':
alpha,
'test':
test,
'alternative':
alternative
})
plot, table = calcPowerGraph(statisticFormDict)
except Exception as e:
result = StandardResponse(e.__str__())
response = StandardResponseSchema().dump(result)
return jsonify(response), 500
response = table
return response, 200
def login():
if request.method == 'POST':
try:
userDict = UserSchema().load(request.get_json())
result = loginHelper(userDict['email'], userDict['password'])
except ValidationError as e:
result = StandardResponse(e.__str__())
response = StandardResponseSchema().dump(result)
return jsonify(response), 400
except InvalidCredentialException as e:
response = BaseExceptionSchema().dump(e)
return jsonify(response), 401
except BaseException as e:
result = StandardResponse(e.message)
response = StandardResponseSchema().dump(result)
return jsonify(response), 500
response = UserSchema().dump(result)
return jsonify(response), 200
def biodiCsv():
if request.method == 'POST':
try:
# print(json.load(request.files['studyInfo']))
# print(json.load(request.files['gammaInfo']))
studyInfoDict = StudyInfoSchema().load(
json.load(request.files['studyInfo']))
studyInfo = prepareStudyInformation(studyInfoDict)
print(request.files)
for i in range(0, studyInfoDict['numGammaRuns']):
gammaInfoDict = GammaInfoSchema().load(
json.load(request.files['gammaInfo' + str(i)]))
print(gammaInfoDict)
gammaInfo = prepareGammaRunInformation(gammaInfoDict, i, 0,
studyInfo.studyDate)
print(gammaInfo)
# mouseInfo = handleMouseCsv(request.files['mouseCsvs' + str(i)])
organInfo = handleMouseAndOrganCsv(
request.files['mouseCsvs' + str(i)],
request.files['organCsvs' + str(i)])
# if gammaInfo['gammaCounter'] == "Hidex":
# handleHidexStudy(biodiFile,studyInfo, gammaInfo, mouseInfo, organInfo)
# elif gammaInfo['gammaCounter'] == "PE":
# handlePEStudy(biodiFile, studyInfo, gammaInfo, mouseInfo, organInfo)
except BaseException as e:
result = BaseException(e.message)
response = BaseExceptionSchema().dump(result)
return jsonify(response), 400
print("GOT HERE FINE")
result = StandardResponse("success")
response = StandardResponseSchema().dump(result)
return jsonify(response), 200
elif request.method == 'GET':
try:
result, studyName = getBiodiCsvRaw(request.args.get('id'))
except BaseException as e:
result = BaseException(e.message)
response = BaseExceptionSchema().dump(result)
return jsonify(response), 500
response = make_response(result)
response.headers[
"Content-Disposition"] = "attachment; filename=" + studyName
response.headers["Content-Type"] = "text/csv; charset=UTF-8"
return response, 200
def counter():
# if request.method == 'GET':
# return getIsotope(name)
if request.method == 'POST':
# TODO: implement rest of API
try:
counterDict = GammaCounterSchema().load(request.get_json())
except ValidationError:
result = StandardResponse("Invaild counter Parameters")
response = StandardResponseSchema().dump(result)
return jsonify(response), 400
return createCounter(counterDict)
def createCounter(counterDict):
gammaCounter = GammaCounter(counterDict['model'])
try:
result = db.createCounter(gammaCounter)
except IntegrityException as e:
response = BaseExceptionSchema().dump(e)
return jsonify(response), 400
except BaseException as e:
response = BaseExceptionSchema().dump(e)
return jsonify(response), 500
result = StandardResponse("Success")
response = StandardResponseSchema().dump(result)
return jsonify(response), 200
def deleteIsotope(name):
try:
isotopeToDelete = db.getIsotope(name)
db.deleteIsotope(isotopeToDelete)
except NotFoundException as e:
response = BaseExceptionSchema().dump(e)
return jsonify(response), 400
except BaseException as e:
response = BaseExceptionSchema().dump(e)
return jsonify(response), 500
result = StandardResponse("Success")
response = StandardResponseSchema().dump(result)
return jsonify(response), 200
def createIsotope(isotopeDict):
isotope = Isotope(isotopeDict['isotopeName'], isotopeDict['halfLife'], isotopeDict['createdBy'])
try:
result = db.createIsotope(isotope)
except IntegrityException as e:
response = BaseExceptionSchema().dump(e)
return jsonify(response), 400
except BaseException as e:
response = BaseExceptionSchema().dump(e)
return jsonify(response), 500
result = StandardResponse("Success")
response = StandardResponseSchema().dump(result)
return jsonify(response), 200
def updateIsotope(name, newIsotopeDict):
newIsotope = Isotope(newIsotopeDict['isotopeName'], newIsotopeDict['halfLife'], newIsotopeDict['createdBy'])
try:
isotopeToUpdate = db.getIsotope(name)
db.updateIsotope(isotopeToUpdate, newIsotope, newIsotope.createdBy)
except NotFoundException as e:
response = BaseExceptionSchema().dump(e)
return jsonify(response), 400
except IntegrityException as e:
response = BaseExceptionSchema().dump(e)
return jsonify(response), 400
except BaseException as e:
response = BaseExceptionSchema().dump(e)
return jsonify(response), 500
result = StandardResponse("Success")
response = StandardResponseSchema().dump(result)
return jsonify(response), 200