def setUpClass(cls): token = environ.get('KB_AUTH_TOKEN', None) cls.ctx = {'token': token, 'provenance': [{'service': 'rls_count_contigs', 'method': 'please_never_use_it_in_production', 'method_params': []}], 'authenticated': 1} config_file = environ.get('KB_DEPLOYMENT_CONFIG', None) cls.cfg = {} config = ConfigParser() config.read(config_file) for nameval in config.items('rls_count_contigs'): cls.cfg[nameval[0]] = nameval[1] cls.wsURL = cls.cfg['workspace-url'] cls.wsClient = workspaceService(cls.wsURL, token=token) cls.serviceImpl = rls_count_contigs(cls.cfg)
def get_config(): if not get_config_file(): return None retconfig = {} config = ConfigParser() config.read(get_config_file()) for nameval in config.items(get_service_name() or 'rls_count_contigs'): retconfig[nameval[0]] = nameval[1] return retconfig config = get_config() from rls_count_contigs.rls_count_contigsImpl import rls_count_contigs impl_rls_count_contigs = rls_count_contigs(config) class JSONObjectEncoder(json.JSONEncoder): def default(self, obj): if isinstance(obj, set): return list(obj) if isinstance(obj, frozenset): return list(obj) if hasattr(obj, 'toJSONable'): return obj.toJSONable() return json.JSONEncoder.default(self, obj) sync_methods = {} async_run_methods = {}