Python edit_pdbの例

コード例 #1

ファイル: rna_pdb_toolsx.py プロジェクト: mmagnus/rna-tools

        struc = RNAStructure(args.file)
        output = str(struc.is_nmr(args.verbose))
        sys.stdout.write(output + '\n')

    #edit
    if args.edit:
        if list != type(args.file):
            args.file = [args.file]
        ##################################
        for f in args.file:
            if args.verbose:
                print(f)
            if args.inplace:
                shutil.copy(f, f + '~')

            output = edit_pdb(f, args)

            if args.inplace:
                with open(f, 'w') as f:
                    f.write(output)
            else:  # write: to stdout
                try:
                    sys.stdout.write(output)
                    sys.stdout.flush()
                except IOError:
                    pass

    if args.fetch:
        fn = fetch(args.file)

    if args.fetch_chain:

コード例 #2

ファイル: rna_pdb_toolsx.py プロジェクト: mmagnus/rna-pdb-tools

        struc = RNAStructure(args.file)
        output = str(struc.is_nmr(args.verbose))
        sys.stdout.write(output + '\n')

    #edit
    if args.edit:
        if list != type(args.file):
            args.file = [args.file]
        ##################################
        for f in args.file:
            if args.verbose:
                print(f)
            if args.inplace:
                shutil.copy(f, f + '~')

            output = edit_pdb(f, args)

            if args.inplace:
                with open(f, 'w') as f:
                    f.write(output)
            else:  # write: to stdout
                try:
                    sys.stdout.write(output)
                    sys.stdout.flush()
                except IOError:
                    pass


    if args.fetch:
        fetch(args.file)