def test_get_output_files_paired():
read1 = project.Read("1.fastq.gz")
read2 = project.Read("2.fastq.gz")
lane = project.Lane("L001", reads=[read1, read2])
expected = (["./L001/output_paired_1.fastq.gz",
"./L001/output_paired_2.fastq.gz"],
["./L001/output_unpaired_1.fastq.gz",
"./L001/output_unpaired_2.fastq.gz"])
assert_equal(trimmostar.get_output_files(".", "paired", lane), expected)
def test_get_output_files_single():
read1 = project.Read("1.fastq.gz")
lane = project.Lane("L001", reads=[read1])
expected = "./L001/output.fastq.gz"
assert_equal(trimmostar.get_output_files(".", "single", lane), expected)
