def main():
s, t = parse_fasta('problem_datasets/rosalind_gaff.txt', True)
alignment = global_align_with_affine(s, t, BLOSUM62(), -11, -1)
with open('output/rosalind_gaff_out.txt', 'w') as f:
f.write('\n'.join(alignment))
print('Maximum alignment score =', alignment[0])
def main():
s, t = parse_fasta('problem_datasets/rosalind_gcon.txt')
max_score = global_align(s, t, BLOSUM62(), -5)
print(max_score)