def test_gen_gsm_html_with_already_existed_html(self, L):
gse_dir = gen_csv.gen_gse_dir(self.temp_outdir, self.gse)
gsm_html = os.path.join(gse_dir, '{0}.html'.format(self.gsm))
with open(gsm_html, 'wb') as opf:
opf.write('')
gen_csv.gen_gsm_html(self.temp_outdir, self.gse, self.gsm)
L.check(('rsempipeline.preprocess.gen_csv', 'INFO',
'{0} already downloaded'.format(gsm_html)))
def test_gen_gsm_html_with_invalid_gsm(self):
html = gen_csv.gen_gsm_html(self.temp_outdir, self.gse, 'invalid_GSM12345')
self.assertTrue(os.path.exists(html))
with open(html) as inf:
content = inf.read()
self.assertIn('Type in the a valid GEO accession number in the text box above', content)
self.assertNotIn(self.gse, content)
def test_gen_gsm_html(self, L):
html = gen_csv.gen_gsm_html(self.temp_outdir, self.gse, self.gsm)
self.assertTrue(os.path.exists(html))
with open(html) as inf:
self.assertIn(self.gse, inf.read())
L.check(('rsempipeline.preprocess.gen_csv', 'INFO',
'downloading {0}'.format(html)))