def process(self, item):
job = item.jobObj
## It is very likely that the job's downloading task has been created
## and assigned in a previous monitoring loop ignore such kind of cases
if job.status in ['completing', 'completed', 'failed']:
return True
job.updateStatus('completing')
try:
logger.info("poststaging output sandbox files")
logger.info(" * %s", saga.url(job.backend.saga_job_out).url)
stdout = saga.filesystem.file(saga.url(job.backend.saga_job_out));
stdout.copy("file://localhost/"+job.getOutputWorkspace().getPath()+"stdout");
logger.info(" * %s", saga.url(job.backend.saga_job_err).url)
stderr = saga.filesystem.file(saga.url(job.backend.saga_job_err));
stderr.copy("file://localhost/"+job.getOutputWorkspace().getPath()+"stderr");
if len(job.outputsandbox) > 0 :
output_sandbox = saga.url(job.backend.filesystem_url+"/"+job.backend.workdir_uuid+"/_output_sandbox.tgz")
logger.info(" * %s", output_sandbox.url)
osb = saga.filesystem.file(output_sandbox)
osb.copy("file://localhost/"+job.getOutputWorkspace().getPath())
## Unpack the output sandbox and delete the archive
osbpath = job.getOutputWorkspace().getPath()+"_output_sandbox.tgz"
if os.path.exists(osbpath):
if os.system("tar -C %s -xzf %s"%(job.getOutputWorkspace().getPath(),job.getOutputWorkspace().getPath()+"/_output_sandbox.tgz")) != 0:
job.updateStatus('failed')
raise Exception('cannot upack output sandbox')
os.remove(osbpath)
job.updateStatus('completed')
except saga.exception as e:
logger.error('exception caught while poststaging: %s', e.get_full_message())
job.updateStatus('failed')
return True
def setupworkdir(self, path):
import shutil, errno
job = self.getJobObject()
# As a side effect, these functions create the
# workspace directories if they don't exist
input_wd_path = job.getInputWorkspace().getPath()
output_wd_path = job.getOutputWorkspace().getPath()
logger.debug("local workspace - input dir: %s", input_wd_path)
logger.debug("local workspace - output dir: %s", output_wd_path)
return True
def setupworkdir(self, path):
import shutil, errno
job = self.getJobObject()
# As a side effect, these functions create the
# workspace directories if they don't exist
input_wd_path = job.getInputWorkspace().getPath()
output_wd_path = job.getOutputWorkspace().getPath()
logger.debug('local workspace - input dir: %s', input_wd_path)
logger.debug('local workspace - output dir: %s', output_wd_path)
return True
def process(self, item):
job = item.jobObj
## It is very likely that the job's downloading task has been created
## and assigned in a previous monitoring loop ignore such kind of cases
if job.status in ['completing', 'completed', 'failed']:
return True
job.updateStatus('completing')
try:
logger.info("poststaging output sandbox files")
logger.info(" * %s", saga.url(job.backend.saga_job_out).url)
stdout = saga.filesystem.file(saga.url(job.backend.saga_job_out))
stdout.copy("file://localhost/" +
job.getOutputWorkspace().getPath() + "stdout")
logger.info(" * %s", saga.url(job.backend.saga_job_err).url)
stderr = saga.filesystem.file(saga.url(job.backend.saga_job_err))
stderr.copy("file://localhost/" +
job.getOutputWorkspace().getPath() + "stderr")
if len(job.outputsandbox) > 0:
output_sandbox = saga.url(job.backend.filesystem_url + "/" +
job.backend.workdir_uuid +
"/_output_sandbox.tgz")
logger.info(" * %s", output_sandbox.url)
osb = saga.filesystem.file(output_sandbox)
osb.copy("file://localhost/" +
job.getOutputWorkspace().getPath())
## Unpack the output sandbox and delete the archive
osbpath = job.getOutputWorkspace().getPath(
) + "_output_sandbox.tgz"
if os.path.exists(osbpath):
if os.system("tar -C %s -xzf %s" %
(job.getOutputWorkspace().getPath(),
job.getOutputWorkspace().getPath() +
"/_output_sandbox.tgz")) != 0:
job.updateStatus('failed')
raise Exception('cannot upack output sandbox')
os.remove(osbpath)
job.updateStatus('completed')
except saga.exception as e:
logger.error('exception caught while poststaging: %s',
e.get_full_message())
job.updateStatus('failed')
return True
