def download_dataset():
delta_data = genfromtxt('time_delta_fixed.tsv',
delimiter='\t',
dtype=None,
names=['ext_timestamp', 'time_delta'])
start = gps_to_datetime(delta_data['ext_timestamp'][0] / int(1e9))
end = gps_to_datetime(delta_data['ext_timestamp'][-1] / int(1e9))
with tables.open_file('data.h5', 'w') as data:
download_data(data, '/s501', 501, start, end)
download_data(data, '/s501_original', 501, start, end)
with tables.open_file('data.h5', 'a') as data:
events = data.root.s501.events
idx = delta_data['ext_timestamp'].tolist().index(
events[-1]['ext_timestamp']) + 1
time_delta = delta_data['time_delta'][:idx]
t3 = data.root.s501.events.col('t3')[1:]
t4 = data.root.s501.events.col('t4')[1:]
events.modify_column(start=1,
colname='t3',
column=where(t3 >= 0, t3 + time_delta, t3))
events.modify_column(start=1,
colname='t4',
column=where(t4 >= 0, t4 + time_delta, t4))
events.flush()
def download_events_data(data):
"""Download event data for each station into a separate table"""
for station in pbar(STATIONS):
group = '/s%d' % station
if group not in data:
download_data(data, group, station, start=START, end=END,
progress=False)
def download_dataset():
with tables.open_file(STATION_PATH, 'w') as data:
for station_number in STATIONS:
download_data(data,
'/s%d' % station_number,
station_number,
start=START,
end=END,
type='events',
progress=True)
def download_data_for_station(station_number):
path = STATION_PATH % station_number
if os.path.exists(path):
return path
with tables.open_file(path, 'a') as data:
for startdt, enddt in monthrange(START, END):
print 'downloading', startdt.date(), enddt.date(), station_number
download_data(data, '/s%d' % station_number, station_number,
start=startdt, end=enddt,
type='events', progress=False)
return path
def download_events_data(data):
"""Download event data for each station into a separate table"""
for station in pbar(STATIONS):
group = '/s%d' % station
if group not in data:
download_data(data,
group,
station,
start=START,
end=END,
progress=False)
def get_weather_data_dataset():
if os.path.exists(DATA_PATH):
print 'Datafile already exists, skipping download'
return
with tables.open_file(DATA_PATH, 'a') as data:
for station in [501]: # , 502, 503, 504, 505, 506, 508, 509, 510]:
for data_type in ['weather', 'events']:
download_data(data,
'/s%d' % station,
station,
datetime(2015, 10, 1),
datetime(2015, 10, 15),
type=data_type)
def download_dataset():
print 'Downloading data . . .'
with tables.open_file(DATA, 'w'):
# Clear previous data
pass
for station in STATIONS:
delta_data = genfromtxt('data/time_delta_%d.tsv' % station,
delimiter='\t',
dtype=None,
names=['ext_timestamp', 'time_delta'])
start = gps_to_datetime(delta_data['ext_timestamp'][0] / int(1e9))
end = gps_to_datetime(delta_data['ext_timestamp'][-1] / int(1e9))
with tables.open_file(DATA, 'a') as data:
download_data(data, '/s%d' % station, station, start, end)
download_data(data, '/s%d_original' % station, station, start, end)
with tables.open_file(DATA, 'a') as data:
events = data.get_node('/s%d' % station, 'events')
# Data ends before delta list because I got delta data from today
delta_ets_list = delta_data['ext_timestamp'].tolist()
stop_idx = delta_ets_list.index(events[-1]['ext_timestamp']) + 1
time_delta = delta_data['time_delta'][:stop_idx]
event_ets_list = events.col('ext_timestamp').tolist()
idx = event_ets_list.index(delta_ets_list[0])
events.remove_rows(0, idx)
try:
last_idx = event_ets_list[idx::].index(
delta_ets_list[-1]) - idx
except ValueError:
pass
else:
events.remove_rows(last_idx)
events.flush()
assert all(
events.col('ext_timestamp') == delta_data['ext_timestamp'])
t3 = events.col('t3')
t4 = events.col('t4')
events.modify_column(colname='t3',
column=where(t3 >= 0, t3 + time_delta, t3))
events.modify_column(colname='t4',
column=where(t4 >= 0, t4 + time_delta, t4))
events.flush()
def download_501_510_dataset():
"""Download a dataset for analysis
"""
print "Downloading 501-510 dataset."
stations = [501, 510]
start = datetime(2014, 10, 1)
end = datetime(2014, 10, 10)
with tables.open_file(
'/Users/arne/Datastore/501_510/c_501_510_141001_141011.h5',
'a') as data:
download_coincidences(data,
stations=stations,
start=start,
end=end,
n=2)
with tables.open_file(
'/Users/arne/Datastore/501_510/e_501_510_141001_141011.h5',
'a') as data:
download_data(data, '/s501', 501, start=start, end=end)
download_data(data, '/s510', 510, start=start, end=end)
start = datetime(2014, 11, 1)
end = datetime(2014, 11, 10)
with tables.open_file(
'/Users/arne/Datastore/501_510/c_501_510_141101_141111.h5',
'a') as data:
download_coincidences(data,
stations=stations,
start=start,
end=end,
n=2)
with tables.open_file(
'/Users/arne/Datastore/501_510/e_501_510_141101_141111.h5',
'a') as data:
download_data(data, '/s501', 501, start=start, end=end)
download_data(data, '/s510', 510, start=start, end=end)
def download_events_data(data):
for station in pbar(STATIONS):
group = '/s%d' % station
if group not in data:
download_data(data, group, station, start=START, end=END,
progress=False)
def get_data(data):
download_data(data, '/s1001', 1001,
datetime(2015, 3, 1), datetime(2015, 3, 20))
import datetime
import tables
from sapphire import download_data, CoincidencesESD
STATIONS = [501, 502, 40001]
START = datetime.datetime(2019, 7, 24)
END = datetime.datetime(2019, 7, 25)
if __name__ == '__main__':
station_groups = ['/s%d' % u for u in STATIONS]
data = tables.open_file('data.h5', 'a')
for station, group in zip(STATIONS, station_groups):
download_data(data, group, station, START, END)
# In[32]:
# We have downloaded data for three stations. Note that we used the sapphire.esd for downloading.
# Thus, we have no traces and the download is quick.
# In order to see what the datafile contains: We have to do the foolowing
print(data)
# In[33]:
def download_dataset():
with tables.open_file(DATA_PATH, 'w') as data:
download_data(data, STATION_GROUP, STATION,
datetime.datetime(2015, 1, 1),
datetime.datetime(2015, 10, 1))
def get_data():
if os.path.exists(DATA):
print 'data already exists'
return
with tables.open_file(DATA, 'w') as data:
download_data(data, '/s99', 99, datetime(2015, 12, 4))