def test_file_doesnt_exist(self):
'''
test a dcd which doent exist
'''
filename = 'file-notexist.dcd'
dcdFileName = DataPath + filename
stdoutFileName = filename + '.stdiout'
pf = dcdio.open_dcd_read(dcdFileName)
sys.stdout = open(stdoutFileName, 'w')
self.o.close_dcd_read(pf)
sys.stdout = sys.__stdout__
code = string.split(open(stdoutFileName).read())[2]
self.assertEqual(int(code), -1)
os.remove(stdoutFileName)
def test_file_doesnt_exist(self):
'''
test a dcd which doent exist
'''
filename = 'file-notexist.dcd'
dcdFileName = DataPath+filename
stdoutFileName = filename+'.stdiout'
pf = dcdio.open_dcd_read(dcdFileName)
sys.stdout = open(stdoutFileName,'w')
self.o.close_dcd_read(pf)
sys.stdout = sys.__stdout__
code=string.split(open(stdoutFileName).read())[2]
self.assertEqual(int(code), -1)
os.remove(stdoutFileName)
def test_1ATM(self):
'''
test a dcd with 2 frames based on an 1-atom pdb
'''
#
filename = '1ATM.dcd'
dcdFileName = DataPath + filename
stdoutFileName = filename + '.stdiout'
pf = dcdio.open_dcd_read(dcdFileName)
sys.stdout = open(stdoutFileName, 'w')
self.o.close_dcd_read(pf)
sys.stdout = sys.__stdout__
code = string.split(open(stdoutFileName).read())[2]
self.assertEqual(int(code), 0)
os.remove(stdoutFileName)
def test_rna_6point4gb(self):
'''
test a dcd of size 6.4gb based on a rna molecule
'''
#
filename = "rna-6.4g.dcd"
dcdFileName = os.path.join('/tmp/', filename)
stdoutFileName = filename + '.stdiout'
pf = dcdio.open_dcd_read(dcdFileName)
sys.stdout = open(stdoutFileName, 'w')
self.o.close_dcd_read(pf)
sys.stdout = sys.__stdout__
code = string.split(open(stdoutFileName).read())[2]
self.assertEqual(int(code), 0)
os.remove(stdoutFileName)
def test_rna_1to10(self):
'''
test a dcd with 10 frames based on a 2-aa pdb
'''
filename = 'rna-1to10.dcd'
dcdFileName = DataPath+filename
stdoutFileName = filename+'.stdiout'
pf = dcdio.open_dcd_read(dcdFileName)
sys.stdout = open(stdoutFileName,'w')
self.o.close_dcd_read(pf)
sys.stdout = sys.__stdout__
code=string.split(open(stdoutFileName).read())[2]
self.assertEqual(int(code), 0)
os.remove(stdoutFileName)
def test_rna_6point4gb(self):
'''
test a dcd of size 6.4gb based on a rna molecule
'''
filename = "rna-6.4g.dcd"
dcdFileName = os.path.join('/tmp/',filename)
stdoutFileName = filename+'.stdiout'
pf = dcdio.open_dcd_read(dcdFileName)
sys.stdout = open(stdoutFileName,'w')
self.o.close_dcd_read(pf)
sys.stdout = sys.__stdout__
code=string.split(open(stdoutFileName).read())[2]
self.assertEqual(int(code), 0)
os.remove(stdoutFileName)
def test_1ATM(self):
'''
test a dcd with 2 frames based on an 1-atom pdb
'''
#
filename = '1ATM.dcd'
dcdFileName = DataPath+filename
stdoutFileName = filename+'.stdiout'
pf = dcdio.open_dcd_read(dcdFileName)
sys.stdout = open(stdoutFileName,'w')
self.o.close_dcd_read(pf)
sys.stdout = sys.__stdout__
code=string.split(open(stdoutFileName).read())[2]
self.assertEqual(int(code), 0)
os.remove(stdoutFileName)