def gsoc_search_display_id(self, part_shop, collection, display_id):
query = sbol2.SearchQuery()
query[sbol2.SBOL_COLLECTION] = collection
query[sbol2.SBOL_DISPLAY_ID] = display_id
# GSOC is always looking for DNA Region
query[sbol2.SBOL_TYPES] = sbol2.BIOPAX_DNA
return part_shop.search(query)
def gsoc_search_title(self, part_shop, collection, title):
query = sbol2.SearchQuery()
query[sbol2.SBOL_COLLECTION] = collection
query[sbol2.SBOL_NAME] = title
# GSOC is always looking for DNA Region
query[sbol2.SBOL_TYPES] = sbol2.BIOPAX_DNA
return part_shop.search(query)
def test_gsoc_count_5(self):
part_shop = sbol2.PartShop(GSOC_SBH_URL)
query = sbol2.SearchQuery()
collection = 'https://synbiohub.org/public/bsu/bsu_collection/1'
query[sbol2.SBOL_COLLECTION] = collection
query[sbol2.SBOL_NAME] = 'accA'
# GSOC is always looking for DNA Region
query[sbol2.SBOL_TYPES] = sbol2.BIOPAX_DNA
count = part_shop.searchCount(query)
self.assertEqual(1, count)
def test_gsoc_example_1_display_id(self):
# See issue #240
collection = 'https://synbiohub.org/public/igem/igem_collection/1'
display_id = 'BBa_E0040'
query = sbol2.SearchQuery()
query[sbol2.SBOL_COLLECTION] = collection
query[sbol2.SBOL_DISPLAY_ID] = display_id
# GSOC is always looking for DNA Region
query[sbol2.SBOL_TYPES] = sbol2.BIOPAX_DNA
part_shop = sbol2.PartShop(GSOC_SBH_URL)
response = part_shop.search(query)
# At least one item in return should be the
# expected return: https://synbiohub.org/public/igem/BBa_E0040/1
identities = [r.identity for r in response]
self.assertIn('https://synbiohub.org/public/igem/BBa_E0040/1',
identities)
#
# All items in response should have name == GFP exactly.
display_ids = [r.displayId == display_id for r in response]
self.assertTrue(all(display_ids))
def test_search_query1(self):
query = sbol2.SearchQuery()
query[sbol2.SBOL_TYPES] = sbol2.BIOPAX_DNA
self.assertIn(sbol2.SBOL_TYPES, query.properties)
self.assertEqual(sbol2.BIOPAX_DNA, query[sbol2.SBOL_TYPES])