def test_full():
data = path(scanalea.__path__[0]) / '..' / '..'
datadir = data / 'share' / 'INRIA_maize' / 'finemesh'
files = datadir.glob('*.ply')
report = pd.read_csv(datadir / 'report.txt',
sep=' *',
header=None,
names=['Date', 'num'],
infer_datetime_format=True)
report = report.sort('Date')
# bad option to do the trick...
def fun(x):
return [f for f in files if ('_' + str(x) + '_') in f][0]
report['filename'] = report['num'].map(fun)
scenes = [read(fn) for fn in report['filename']]
shapes = [
normalised(scenes[xx][0], (xx / 5, xx % 5., 0),
(xx * 10, 80, (xx * 30) % 255)) for xx in range(len(scenes))
]
scene = Scene(shapes)
return scene
def test_full():
data = path(scanalea.__path__[0])/'..'/'..'
datadir = data/'share'/'INRIA_maize'/'finemesh'
files =datadir.glob('*.ply')
report = pd.read_csv(datadir/'report.txt',
sep=' *',
header=None,
names=['Date', 'num'],
infer_datetime_format=True)
report =report.sort('Date')
# bad option to do the trick...
def fun(x):
return [f for f in files if ('_'+str(x)+'_') in f][0]
report['filename'] = report['num'].map(fun)
scenes = [read(fn) for fn in report['filename']]
shapes = [normalised(scenes[xx][0], (xx/5,xx%5.,0), (xx*10,80,(xx*30)%255)) for xx in range(len(scenes))]
scene = Scene(shapes)
return scene
def test_simple():
data = path(scanalea.__path__[0]) / '..' / '..'
scene = read(fn)
geometry = scene[0]
from openalea.plantgl.all import *
from scanalea import segmentation as seg
from scanalea.codecs import read, ply
import numpy as np
from time import time
fn = '/media/pradal/DONNEES/pradal/data/plantscan/segmented/segmentedMesh.vtk'
fn = '/media/pradal/DONNEES/pradal/data/plantscan/segmented/segmentedMesh_manualseg.vtk'
scene = read(fn)
Viewer.display(scene)
scene1, stems, leaves, coords = seg.organs(scene)
"""
from scanalea.light import caribu, display, turtle
caribu_scene, res = caribu(scene, source=turtle(16))
display(scene, res)
"""
leaves_data = '/media/pradal/DONNEES/pradal/data/plantscan/segmented3/leaves_data.csv'
g = seg.create_mtg(stems, leaves,coords, leaves_data=leaves_data)
Viewer.display(Scene(g.property('geometry').values()))
g = add_leaves_data(g,leaves_data)
"""
fn = '/media/pradal/DONNEES/pradal/data/plantscan/663_4_tp/FourTPsec_20130326_3199_663_res1280_full_vh_smoothed_textured.ply'
t1 = time()
def test_ply():
fn = '/media/pradal/DONNEES/pradal/data/plantscan/663_4_tp/FourTPsec_20130326_3199_663_res1280_full_vh_smoothed_textured.ply'
scene = read(fn)
def test_ply():
fn = '/media/pradal/DONNEES/pradal/data/plantscan/663_4_tp/FourTPsec_20130326_3199_663_res1280_full_vh_smoothed_textured.ply'
scene = read(fn)
def test_simple():
data = path(scanalea.__path__[0])/'..'/'..'
scene = read(fn)
geometry = scene[0]
