コード例 #1
0
ファイル: tst_joint_lib.py プロジェクト: dials/cctbx
 def __init__(O, pivot):
     O.sites = [matrix.col((2 / 3., 0, 1 / 3.)) + pivot]
     O.A = joint_lib.revolute_alignment(pivot=pivot,
                                        normal=matrix.col((1, 0, 0)))
     O.I = spatial_inertia_from_sites(sites=O.sites, alignment_T=O.A.T0b)
     O.wells = O.sites
     O.J = joint_lib.revolute(qE=matrix.col([math.pi / 6.]))
     O.qd = matrix.col([0])
コード例 #2
0
 def __init__(O, pivot):
   O.sites = [matrix.col((2/3.,0,1/3.))+pivot]
   O.A = joint_lib.revolute_alignment(
     pivot=pivot,
     normal=matrix.col((1,0,0)))
   O.I = spatial_inertia_from_sites(sites=O.sites, alignment_T=O.A.T0b)
   O.wells = O.sites
   O.J = joint_lib.revolute(qE=matrix.col([math.pi/6.]))
   O.qd = matrix.col([0])
コード例 #3
0
 def __init__(O, labels, sites, bonds, pivot, normal, mersenne_twister):
   O.labels = labels
   O.sites = sites
   O.bonds = bonds
   O.A = joint_lib.revolute_alignment(pivot=pivot, normal=normal)
   O.I = spatial_inertia_from_sites(sites=O.sites, alignment_T=O.A.T0b)
   #
   O.wells = shift_gently(sites=O.sites, mersenne_twister=mersenne_twister)
   #
   O.J = joint_lib.revolute(qE=matrix.col([0]))
   O.qd = O.J.qd_zero
コード例 #4
0
 def __init__(O, labels, sites, bonds, pivot, normal, mersenne_twister):
     O.labels = labels
     O.sites = sites
     O.bonds = bonds
     O.A = joint_lib.revolute_alignment(pivot=pivot, normal=normal)
     O.I = spatial_inertia_from_sites(sites=O.sites, alignment_T=O.A.T0b)
     #
     O.wells = shift_gently(sites=O.sites,
                            mersenne_twister=mersenne_twister)
     #
     O.J = joint_lib.revolute(qE=matrix.col([0]))
     O.qd = O.J.qd_zero
コード例 #5
0
 def d_pot_d_q_via_finite_differences(O, eps=1.e-6):
   result = []
   for B in O.bodies:
     fs = []
     J_orig = B.J
     for signed_eps in [eps, -eps]:
       B.J = joint_lib.revolute(qE=matrix.col((J_orig.qE[0]+signed_eps,)))
       O.e_pot_and_f_ext_update()
       fs.append(O.e_pot)
     B.J = J_orig
     result.append(matrix.col(((fs[0]-fs[1])/(2*eps),)))
   O.energies_and_accelerations_update()
   return result
コード例 #6
0
ファイル: tst_joint_lib.py プロジェクト: dials/cctbx
 def d_pot_d_q_via_finite_differences(O, eps=1.e-6):
     result = []
     for B in O.bodies:
         fs = []
         J_orig = B.J
         for signed_eps in [eps, -eps]:
             B.J = joint_lib.revolute(qE=matrix.col((J_orig.qE[0] +
                                                     signed_eps, )))
             O.e_pot_and_f_ext_update()
             fs.append(O.e_pot)
         B.J = J_orig
         result.append(matrix.col(((fs[0] - fs[1]) / (2 * eps), )))
     O.energies_and_accelerations_update()
     return result
コード例 #7
0
 def __init__(O, mersenne_twister, prev=None):
   if (prev is None):
     normal = matrix.col(mersenne_twister.random_double_point_on_sphere())
     pivot = matrix.col(mersenne_twister.random_double_point_on_sphere()) * 0.6
   else:
     normal = prev.A.normal
     pivot = prev.A.pivot + normal * 0.3
   O.sites = [pivot + normal * (-0.8)]
   O.A = joint_lib.revolute_alignment(pivot=pivot, normal=normal)
   O.I = spatial_inertia_from_sites(sites=O.sites, alignment_T=O.A.T0b)
   #
   O.wells = create_wells(sites=O.sites, mersenne_twister=mersenne_twister)
   #
   O.J = joint_lib.revolute(qE=matrix.col([math.pi/8]))
   O.qd = matrix.col([math.pi/12])
コード例 #8
0
ファイル: tst_singular.py プロジェクト: dials/cctbx
 def __init__(O, mersenne_twister, prev=None):
   if (prev is None):
     normal = matrix.col(mersenne_twister.random_double_point_on_sphere())
     pivot = matrix.col(mersenne_twister.random_double_point_on_sphere()) * 0.6
   else:
     normal = prev.A.normal
     pivot = prev.A.pivot + normal * 0.3
   O.sites = [pivot + normal * (-0.8)]
   O.A = joint_lib.revolute_alignment(pivot=pivot, normal=normal)
   O.I = spatial_inertia_from_sites(sites=O.sites, alignment_T=O.A.T0b)
   #
   O.wells = create_wells(sites=O.sites, mersenne_twister=mersenne_twister)
   #
   O.J = joint_lib.revolute(qE=matrix.col([math.pi/8]))
   O.qd = matrix.col([math.pi/12])
コード例 #9
0
 def __init__(O, mersenne_twister):
   def random_vector():
     return matrix.col(mersenne_twister.random_double(size=3)*2-1)
   def random_angle():
     return (mersenne_twister.random_double()*2-1)*math.pi
   #
   O.sites = [random_vector()]
   for i_trial in xrange(100): # guard against unlikely singularity
     O.A = joint_lib.revolute_alignment(
       pivot=random_vector(),
       normal=random_vector().normalize())
     if (abs(O.A.normal.cos_angle(O.sites[0] - O.A.pivot)) > 1.e-3):
       break
   else:
     raise RuntimeError
   O.I = spatial_inertia_from_sites(sites=O.sites, alignment_T=O.A.T0b)
   #
   O.wells = [random_vector()]
   #
   O.J = joint_lib.revolute(qE=matrix.col([random_angle()]))
   O.qd = matrix.col([random_angle()])
コード例 #10
0
ファイル: tst_joint_lib.py プロジェクト: dials/cctbx
    def __init__(O, mersenne_twister):
        def random_vector():
            return matrix.col(mersenne_twister.random_double(size=3) * 2 - 1)

        def random_angle():
            return (mersenne_twister.random_double() * 2 - 1) * math.pi

        #
        O.sites = [random_vector()]
        for i_trial in range(100):  # guard against unlikely singularity
            O.A = joint_lib.revolute_alignment(
                pivot=random_vector(), normal=random_vector().normalize())
            if (abs(O.A.normal.cos_angle(O.sites[0] - O.A.pivot)) > 1.e-3):
                break
        else:
            raise RuntimeError
        O.I = spatial_inertia_from_sites(sites=O.sites, alignment_T=O.A.T0b)
        #
        O.wells = [random_vector()]
        #
        O.J = joint_lib.revolute(qE=matrix.col([random_angle()]))
        O.qd = matrix.col([random_angle()])