seedpairs = 0
for seed in seeding.generate_seed(g1_seed_file, g2_seed_file):
seedpairs += 1
print("Num of Seedpairs: " + str(seedpairs))
for seed in seeding.generate_seed(g1_seed_file, g2_seed_file):
seednum += 1
print("seednum: " + str(seednum) + " out of " + str(seedpairs))
n1, n2 = seed
mat1, e1 = seeding.adj_mat(n1, graph1)
mat2, e2 = seeding.adj_mat(n2, graph2)
if mat1 != mat2:
print(mat1)
print(mat2)
m = e1
curr_seed = next(seeding.get_aligned_seed(zip(*seed), graph1, graph2))
print(curr_seed)
# alignments = iter_alignment.iter_align(graph1, graph2, curr_seed, seednum=seednum, sims=sims, ec_mode=ec_mode, ed=ed, m=m, sb=sb
# , K=K, debug=args.debugval, delta=args.delta)
alignments = iter_alignment.fast_align(graph1,
graph2,
curr_seed,
seednum=seednum,
sims=sims,
ec_mode=ec_mode,
ed=ed,
m=m,
sb=sb,
K=K,
seednum = 0
seedpairs = 0
for seed in seeding.generate_seed(g1_seed_file, g2_seed_file):
seedpairs += 1
print("Num of Seedpairs: " + str(seedpairs))
for seed in seeding.generate_seed(g1_seed_file, g2_seed_file):
seednum += 1
print("seednum: " + str(seednum) + " out of " + str(seedpairs))
n1, n2 = seed
mat1, e1 = seeding.adj_mat(n1, graph1)
mat2, e2 = seeding.adj_mat(n2, graph2)
if mat1 != mat2:
print(mat1)
print(mat2)
recalignment.rec_align(graph1,
graph2,
seeding.get_aligned_seed(
zip(*seed), graph1, graph2),
sims,
ec_mode,
ed,
e1,
delta,
alpha,
seednum,
timestop=timestop_arg,
debug=args.debugval)
g2_seedstr = args.g2seed
ec_mode = (float(args.ec1bound), float(args.ec2bound), float(args.s3bound))
ed = (float(args.edbound))
alpha = float(args.alpha)
seednum = int(args.seednum)
simbound = float(args.simbound)
g1seed = seeding.get_seed_line(args.g1seed, args.g1seedline)
g2seed = seeding.get_seed_line(args.g2seed, args.g2seedline)
assert g1seed[0] == g2seed[0], "Kval not matching"
g1seed = g1seed[1:]
g2seed = g2seed[1:]
print(g1seed)
print(g2seed)
seed = seeding.get_aligned_seed(zip(g1seed, g2seed), graph1, graph2)
print(seed)
mat1, e1 = seeding.adj_mat(g1seed, graph1)
timestop_arg = float(args.timestop)
if timestop_arg < 0:
timestop_arg = None
else:
ntimestop = timestop_arg * 3600
timestop_arg = ntimestop
if simbound > 0:
print("Building sim..")
sims = builder.get_sim(args.sim, graph1, graph2, args.pickle)
print("sim built")
#recalignment.rec_align(graph1, graph2, seed, sims, ec_mode, ed, e1, simbound, delta, alpha, seednum, args.outputdir, timestop=timestop_arg, debug=args.debugval)
p = multiprocessing.Process(