def test_rotation_error(ned_rotation_error, expected_receiver_fn,
tmpdir_factory):
# Test simple rotation error
ned_duplicate = copy.deepcopy(ned_rotation_error)
result = analyze_station_orientations(ned_rotation_error,
SYNTH_CURATION_OPTS,
DEFAULT_CONFIG_FILTERING,
DEFAULT_CONFIG_PROCESSING)
print(ned_rotation_error.param, result)
assert EXPECTED_SYNTH_KEY in result
assert result[EXPECTED_SYNTH_KEY][
'azimuth_correction'] == -ned_rotation_error.param
# Apply correction and check that we can recover proper receiver function
ned_duplicate.apply(lambda stream: correct_back_azimuth(
None,
stream,
baz_correction=result[EXPECTED_SYNTH_KEY]['azimuth_correction']))
stacked_rf_R, rfs = compute_ned_stacked_rf(ned_duplicate)
actual_plot_filename = 'test_analyze_orientations_actual_{}.png'.format(
ned_rotation_error.param)
actual_outfile = os.path.join(
tmpdir_factory.mktemp('actual_receiver_fn').strpath,
actual_plot_filename)
plot_rf_stack(rfs, save_file=actual_outfile)
print('Actual RF plot saved to tmp file {}'.format(actual_outfile))
expected_data = expected_receiver_fn[0].data
actual_data = stacked_rf_R[0].data
delta = np.abs(actual_data - expected_data)
rmse = np.sqrt(np.mean(np.square(delta)))
rms = np.sqrt(np.mean(np.square(expected_data)))
print('Rotated RMSE:', rmse, ', RMSE rel:', rmse / rms)
assert np.allclose(actual_data, expected_data, rtol=1.0e-3, atol=1.0e-5)
def expected_receiver_fn(_master_event_dataset, tmpdir_factory):
ned = copy.deepcopy(_master_event_dataset)
baseline_plot_filename = 'test_analyze_orientations_baseline.png'
baseline_outfile = os.path.join(
tmpdir_factory.mktemp('expected_receiver_fn').strpath,
baseline_plot_filename)
baseline_rf, details = compute_ned_stacked_rf(ned)
plot_rf_stack(details, save_file=baseline_outfile)
print('Reference RF plot saved to tmp file {}'.format(baseline_outfile))
plt.close()
return baseline_rf
def test_channel_negated(ned_channel_negated, expected_receiver_fn,
tmpdir_factory):
# Test negation of one or both transverse channels
ned_duplicate = copy.deepcopy(ned_channel_negated)
plot_folder = tmpdir_factory.mktemp('test_channel_negated_{}'.format(
ned_channel_negated.param)).strpath
result = analyze_station_orientations(ned_channel_negated,
SYNTH_CURATION_OPTS,
DEFAULT_CONFIG_FILTERING,
DEFAULT_CONFIG_PROCESSING,
save_plots_path=plot_folder)
print('Negated Analysis plots saved to', plot_folder)
print('Negated {}'.format(ned_channel_negated.param), result)
assert EXPECTED_SYNTH_KEY in result
assert result[EXPECTED_SYNTH_KEY]['azimuth_correction'] != 0.0
# Even though the induced error here is not a rotation,
# prospectively apply correction and check how it relates to the
# proper, unperturbed receiver function.
# This test demonstrates that a channel negation can be repaired by
# treating it as if it were a rotation error.
ned_duplicate.apply(lambda stream: correct_back_azimuth(
None,
stream,
baz_correction=result[EXPECTED_SYNTH_KEY]['azimuth_correction']))
stacked_rf_R, rfs = compute_ned_stacked_rf(ned_duplicate)
actual_plot_filename = 'test_analyze_orientations_actual_{}.png'.format(
ned_channel_negated.param)
actual_outfile = os.path.join(
tmpdir_factory.mktemp('actual_receiver_fn').strpath,
actual_plot_filename)
plot_rf_stack(rfs, save_file=actual_outfile)
print('Actual RF plot saved to tmp file {}'.format(actual_outfile))
expected_data = expected_receiver_fn[0].data
actual_data = stacked_rf_R[0].data
delta = np.abs(actual_data - expected_data)
rmse = np.sqrt(np.mean(np.square(delta)))
rms = np.sqrt(np.mean(np.square(expected_data)))
rmse_rel = rmse / rms
print('Negated RMSE:', rmse, ', RMSE rel:', rmse_rel)
assert rmse_rel < 0.05
def main():
output_folder = 'moho_discontinuity'
if not os.path.exists(output_folder):
os.mkdir(output_folder)
# end if
# Generate data files corresponding to two different Moho depths
V_s = 3.8 # km/s
V_p = 6.4 # km/s
H_0 = 40 # km
k = V_p / V_s
log.info("H_0 = {:.3f}".format(H_0))
log.info("k = {:.3f}".format(k))
# Loop over valid range of inclinations and generate synthetic RFs
num_traces = 15
inclinations = np.linspace(14.0, 27.0, num_traces)
distances = convert_inclination_to_distance(inclinations)
final_sample_rate_hz = 10.0
# stream_0 = synthesize_rf_dataset(H_0, V_p, V_s, inclinations, distances, final_sample_rate_hz, log, baz=0)
stream_0, _ = synthesize_rf_dataset(
H_0,
V_p,
V_s,
inclinations,
distances,
final_sample_rate_hz,
log,
# amplitudes=[1, 0.5, 0.2], baz=0)
amplitudes=[1, 0.4, 0.3],
baz=0)
stream_0.write(os.path.join(output_folder,
"synth_rf_data_H={}.h5".format(H_0)),
format='h5')
H_1 = 50
# stream_1 = synthesize_rf_dataset(H_1, V_p, V_s, inclinations, distances, final_sample_rate_hz, log, baz=90)
stream_1, _ = synthesize_rf_dataset(
H_1,
V_p,
V_s,
inclinations,
distances,
final_sample_rate_hz,
log,
# amplitudes=[1, 0.4, 0.3], baz=90)
amplitudes=[1, 0.5, 0.2],
baz=90)
stream_1.write(os.path.join(output_folder,
"synth_rf_data_H={}.h5".format(H_1)),
format='h5')
# Plot each dataset separately, then aggregated together
rf_fig_0 = rf_plot_utils.plot_rf_stack(stream_0, time_window=(-5, 30))
plt.title("Exact H = {:.3f}, k = {:.3f}".format(H_0, k))
rf_fig_0.savefig(os.path.join(output_folder,
"synth_rf_H={}.png".format(H_0)),
dpi=300)
rf_fig_1 = rf_plot_utils.plot_rf_stack(stream_1, time_window=(-5, 30))
plt.title("Exact H = {:.3f}, k = {:.3f}".format(H_1, k))
rf_fig_1.savefig(os.path.join(output_folder,
"synth_rf_H={}.png".format(H_1)),
dpi=300)
stream_all = stream_0 + stream_1
rf_fig_all = rf_plot_utils.plot_rf_stack(stream_all, time_window=(-5, 30))
plt.title("Exact H = {:.3f}+{:.3f}, k = {:.3f}".format(H_0, H_1, k))
rf_fig_all.savefig(os.path.join(output_folder,
"synth_rf_H={}+{}.png".format(H_0, H_1)),
dpi=300)
# Run H-k stacking on synthetic data
station_db = {'HHR': stream_all}
k_grid, h_grid, hk = rf_stacking.compute_hk_stack(station_db['HHR'],
include_t3=False,
root_order=2)
w = (0.5, 0.5)
w_str = "w={:1.2f},{:1.2f}".format(*w)
stack = rf_stacking.compute_weighted_stack(hk, weighting=w)
hk_fig = rf_plot_utils.plot_hk_stack(
k_grid,
h_grid,
stack,
num=len(stream_all),
title="Synthetic H-k stack ({})".format(w_str))
maxima = rf_stacking.find_local_hk_maxima(k_grid,
h_grid,
stack,
min_rel_value=0.9)
log.info("Numerical solutions:{}".format(maxima))
plt.text(k,
H_0 + 1.5,
"Solution $H_0$ = {:.3f}, k = {:.3f}".format(H_0, k),
color="#ffffff",
fontsize=16,
horizontalalignment='left')
plt.text(k,
H_1 + 1.5,
"Solution $H_1$ = {:.3f}, k = {:.3f}".format(H_1, k),
color="#ffffff",
fontsize=16,
horizontalalignment='left')
for h_max, k_max, _, _, _ in maxima:
plt.scatter(k_max, h_max, marker='+', c="#000000", s=20)
# end for
# Save result
hk_fig.savefig(os.path.join(output_folder,
"synth_stack_{}.png".format(w_str)),
dpi=300)
def main(input_file,
output_file,
event_mask_folder='',
apply_amplitude_filter=False,
apply_similarity_filter=False,
hk_weights=DEFAULT_HK_WEIGHTS):
# Read source file
data_all = rf_util.read_h5_rf(input_file)
# Convert to hierarchical dictionary format
data_dict = rf_util.rf_to_dict(data_all)
event_mask_dict = None
if event_mask_folder and os.path.isdir(event_mask_folder):
mask_files = os.listdir(event_mask_folder)
mask_files = [
f for f in mask_files
if os.path.isfile(os.path.join(event_mask_folder, f))
]
# print(mask_files)
pattern = r"([A-Za-z0-9\.]{5,})_event_mask\.txt"
pattern = re.compile(pattern)
event_mask_dict = dict()
for f in mask_files:
match_result = pattern.match(f)
if not match_result:
continue
code = match_result[1]
# print(code)
with open(os.path.join(event_mask_folder, f), 'r') as f:
events = f.readlines()
events = set([e.strip() for e in events])
event_mask_dict[code] = events
# end with
# end for
# end if
if event_mask_dict:
print("Loaded {} event masks".format(len(event_mask_dict)))
# end if
# Plot all data to PDF file
fixed_stack_height_inches = 0.8
y_pad_inches = 1.6
total_trace_height_inches = paper_size_A4[
1] - fixed_stack_height_inches - y_pad_inches
max_trace_height = 0.2
with PdfPages(output_file) as pdf:
# Would like to use Tex, but lack desktop PC privileges to update packages to what is required
plt.rc('text', usetex=False)
pbar = tqdm.tqdm(total=len(data_dict))
network = data_dict.network
rf_type = data_dict.rotation
for st in sorted(data_dict.keys()):
station_db = data_dict[st]
pbar.update()
pbar.set_description("{}.{}".format(network, st))
# Choose RF channel
channel = rf_util.choose_rf_source_channel(rf_type, station_db)
channel_data = station_db[channel]
full_code = '.'.join([network, st, channel])
t_channel = list(channel)
t_channel[-1] = 'T'
t_channel = ''.join(t_channel)
rf_stream = rf.RFStream(channel_data).sort(['back_azimuth'])
if event_mask_dict and full_code in event_mask_dict:
# Select events from external source
event_mask = event_mask_dict[full_code]
rf_stream = rf.RFStream([
tr for tr in rf_stream if tr.stats.event_id in event_mask
]).sort(['back_azimuth'])
# end if
if apply_amplitude_filter:
# Label and filter quality
rf_util.label_rf_quality_simple_amplitude(rf_type, rf_stream)
rf_stream = rf.RFStream([
tr for tr in rf_stream if tr.stats.predicted_quality == 'a'
]).sort(['back_azimuth'])
# end if
if apply_similarity_filter:
rf_stream = rf_util.filter_crosscorr_coeff(rf_stream)
# end if
if not rf_stream:
continue
# Find matching T-component data
events = [tr.stats.event_id for tr in rf_stream]
transverse_data = station_db[t_channel]
t_stream = rf.RFStream([
tr for tr in transverse_data if tr.stats.event_id in events
]).sort(['back_azimuth'])
if not t_stream:
continue
# Plot pinwheel of primary and transverse components
fig = rf_plot_utils.plot_rf_wheel([rf_stream, t_stream],
fontscaling=0.8)
fig.set_size_inches(*paper_size_A4)
plt.tight_layout()
plt.subplots_adjust(hspace=0.15, top=0.95, bottom=0.15)
ax = fig.gca()
fig.text(-0.32,
-0.32,
"\n".join(rf_stream[0].stats.processing),
fontsize=6,
transform=ax.transAxes)
pdf.savefig(dpi=300, papertype='a4', orientation='portrait')
plt.close()
num_traces = len(rf_stream)
assert len(t_stream) == num_traces
# Plot RF stack of primary component
trace_ht = min(total_trace_height_inches / num_traces,
max_trace_height)
fig = rf_plot_utils.plot_rf_stack(
rf_stream,
trace_height=trace_ht,
stack_height=fixed_stack_height_inches,
fig_width=paper_size_A4[0])
fig.suptitle("Channel {}".format(rf_stream[0].stats.channel))
# Customize layout to pack to top of page while preserving RF plots aspect ratios
_rf_layout_A4(fig)
# Save to new page in file
pdf.savefig(dpi=300, papertype='a4', orientation='portrait')
plt.close()
# Plot RF stack of transverse component
fig = rf_plot_utils.plot_rf_stack(
t_stream,
trace_height=trace_ht,
stack_height=fixed_stack_height_inches,
fig_width=paper_size_A4[0])
fig.suptitle("Channel {}".format(t_stream[0].stats.channel))
# Customize layout to pack to top of page while preserving RF plots aspect ratios
_rf_layout_A4(fig)
# Save to new page in file
pdf.savefig(dpi=300, papertype='a4', orientation='portrait')
plt.close()
# Plot H-k stack using primary RF component
fig = _produce_hk_stacking(rf_stream, weighting=hk_weights)
paper_landscape = (paper_size_A4[1], paper_size_A4[0])
fig.set_size_inches(*paper_landscape)
# plt.tight_layout()
# plt.subplots_adjust(hspace=0.15, top=0.95, bottom=0.15)
pdf.savefig(dpi=300, papertype='a4', orientation='landscape')
plt.close()
# end for
pbar.close()
def main():
save_dist_plot = False
output_folder = 'hk_validation'
if not os.path.exists(output_folder):
os.mkdir(output_folder)
# end if
n = 0
V_s = 3.8 # km/s, top (crust) layer
H_range = np.linspace(30.0, 60.0, 4) # km
V_p_range = np.linspace(5.7, 7.22, 5) # km/s
include_t3 = True
for H in H_range:
for V_p in V_p_range:
k = V_p / V_s
log.info("H = {:.3f}".format(H))
log.info("k = {:.3f}".format(k))
# Generate function mapping ray parameter to teleseismic distance.
# The distances are not strictly required for H-k stacking, but rf behaves better when they are there.
ts_distance = np.linspace(25, 95, 71)
inc = np.zeros_like(ts_distance)
model = obspy.taup.TauPyModel(model="iasp91")
source_depth_km = 10.0
for i, d in enumerate(ts_distance):
ray = model.get_ray_paths(source_depth_km, d, phase_list=['P'])
inc[i] = ray[0].incident_angle # pylint: disable=unsupported-assignment-operation
# end for
if save_dist_plot:
plt.plot(inc, ts_distance, '-+')
plt.xlabel('P-arrival inclination (deg)')
plt.ylabel('Teleseismic distance (deg)')
plt.title(
"Relationship between incident angle and teleseismic distance\n"
"(source depth = {:2.0f} km)".format(source_depth_km))
plt.grid("#80808080", linestyle=":")
plt.savefig(os.path.join(output_folder,
"inclination_dist.png"),
dpi=300)
# end if
# Create interpolator to convert inclination to teleseismic distance
interp_dist = interp1d(inc,
ts_distance,
bounds_error=False,
fill_value=(np.max(ts_distance),
np.min(ts_distance)))
# Loop over valid range of inclinations and generate synthetic RFs
num_traces = 20
inclinations = np.linspace(np.min(inc), np.max(inc), num_traces)
distances = interp_dist(inclinations)
final_sample_rate_hz = 10.0
stream = synthesize_rf_dataset(H, V_p, V_s, inclinations,
distances, final_sample_rate_hz,
log, include_t3)
stream.write(os.path.join(output_folder, "synth_rf_data.h5"),
format='h5')
# Plot synthetic RFs
rf_fig = rf_plot_utils.plot_rf_stack(stream, time_window=(-5, 30))
plt.title("Exact H = {:.3f}, k = {:.3f}".format(H, k))
rf_fig.savefig(os.path.join(output_folder,
"synth_rf_{:03d}.png".format(n)),
dpi=300)
# Run H-k stacking on synthetic data
station_db = {'HHR': stream}
k_grid, h_grid, hk = rf_stacking.compute_hk_stack(
station_db['HHR'], include_t3=include_t3)
fig = rf_plot_utils.plot_hk_stack(k_grid,
h_grid,
hk[0],
title="Synthetic Ps component")
fig.savefig(os.path.join(output_folder, "Ps_{:03d}.png".format(n)),
dpi=300)
plt.close()
fig = rf_plot_utils.plot_hk_stack(k_grid,
h_grid,
hk[1],
title="Synthetic PpPs component")
fig.savefig(os.path.join(output_folder,
"PpPs_{:03d}.png".format(n)),
dpi=300)
plt.close()
if include_t3:
fig = rf_plot_utils.plot_hk_stack(
k_grid,
h_grid,
hk[2],
title="Synthetic PpSs+PsPs component")
fig.savefig(os.path.join(output_folder,
"PpSs+PsPs_{:03d}.png".format(n)),
dpi=300)
plt.close()
w = (0.34, 0.33, 0.33)
w_str = "w={:1.2f},{:1.2f},{:1.2f}".format(*w)
else:
w = (0.5, 0.5)
w_str = "w={:1.2f},{:1.2f}".format(*w)
# end if
stack = rf_stacking.compute_weighted_stack(hk, weighting=w)
hk_fig = rf_plot_utils.plot_hk_stack(
k_grid,
h_grid,
stack,
num=len(stream),
title="Synthetic H-k stack ({})".format(w_str))
plt.text(1.45,
65.0,
"Expected H = {:.3f}, k = {:.3f}".format(H, k),
color="#ffffff",
fontsize=16,
fontweight='bold')
# Determine H-k location of numerical maximum in the solution space.
h_max, k_max = rf_stacking.find_global_hk_maximum(
k_grid, h_grid, stack)
log.info("Numerical solution (H, k) = ({:.3f}, {:.3f})".format(
h_max, k_max))
plt.scatter(k_max, h_max, marker='+', c="#000000", s=20)
if k_max >= 1.7:
plt.text(k_max - 0.01,
h_max + 1,
"Solution H = {:.3f}, k = {:.3f}".format(
h_max, k_max),
color="#ffffff",
fontsize=16,
horizontalalignment='right')
else:
plt.text(k_max + 0.01,
h_max + 1,
"Solution H = {:.3f}, k = {:.3f}".format(
h_max, k_max),
color="#ffffff",
fontsize=16)
# end if
# Save result
hk_fig.savefig(os.path.join(
output_folder, "synth_stack_{}_{:03d}.png".format(w_str, n)),
dpi=300)
n += 1
def main(input_file,
output_file,
event_mask_folder='',
apply_amplitude_filter=False,
apply_similarity_filter=False,
hk_weights=DEFAULT_HK_WEIGHTS,
hk_solution_labels=DEFAULT_HK_SOLN_LABEL,
hk_hpf_freq=None,
hk_vp=DEFAULT_Vp,
save_hk_solution=False):
# docstring redundant since CLI options are already documented.
log.setLevel(logging.INFO)
# Read source file
log.info("Loading input file {}".format(input_file))
data_all = rf_util.read_h5_rf(input_file)
# Convert to hierarchical dictionary format
data_dict = rf_util.rf_to_dict(data_all)
event_mask_dict = None
if event_mask_folder and os.path.isdir(event_mask_folder):
log.info(
"Applying event mask from folder {}".format(event_mask_folder))
mask_files = os.listdir(event_mask_folder)
mask_files = [
f for f in mask_files
if os.path.isfile(os.path.join(event_mask_folder, f))
]
pattern = r"([A-Za-z0-9\.]{5,})_event_mask\.txt"
pattern = re.compile(pattern)
event_mask_dict = dict()
for f in mask_files:
match_result = pattern.match(f)
if not match_result:
continue
code = match_result[1]
with open(os.path.join(event_mask_folder, f), 'r') as _f:
events = _f.readlines()
events = set([e.strip() for e in events])
event_mask_dict[code] = events
# end with
# end for
# end if
if event_mask_dict:
log.info("Loaded {} event masks".format(len(event_mask_dict)))
# end if
# Plot all data to PDF file
fixed_stack_height_inches = 0.8
y_pad_inches = 1.6
total_trace_height_inches = paper_size_A4[
1] - fixed_stack_height_inches - y_pad_inches
max_trace_height = 0.2
log.setLevel(logging.WARNING)
with PdfPages(output_file) as pdf:
# Would like to use Tex, but lack desktop PC privileges to update packages to what is required
plt.rc('text', usetex=False)
pbar = tqdm.tqdm(total=len(data_dict))
network = data_dict.network
rf_type = data_dict.rotation
hk_soln = dict()
station_coords = dict()
for st in sorted(data_dict.keys()):
station_db = data_dict[st]
pbar.update()
pbar.set_description("{}.{}".format(network, st))
# Choose RF channel
channel = rf_util.choose_rf_source_channel(rf_type, station_db)
channel_data = station_db[channel]
if not channel_data:
continue
# end if
full_code = '.'.join([network, st, channel])
t_channel = list(channel)
t_channel[-1] = 'T'
t_channel = ''.join(t_channel)
rf_stream = rf.RFStream(channel_data).sort(['back_azimuth'])
if event_mask_dict and full_code in event_mask_dict:
# Select events from external source
event_mask = event_mask_dict[full_code]
rf_stream = rf.RFStream([
tr for tr in rf_stream if tr.stats.event_id in event_mask
]).sort(['back_azimuth'])
# end if
if apply_amplitude_filter:
# Label and filter quality
rf_util.label_rf_quality_simple_amplitude(rf_type, rf_stream)
rf_stream = rf.RFStream([
tr for tr in rf_stream if tr.stats.predicted_quality == 'a'
]).sort(['back_azimuth'])
# end if
if not rf_stream:
continue
if apply_similarity_filter and len(rf_stream) >= 3:
rf_stream = rf_util.filter_crosscorr_coeff(rf_stream)
# end if
if not rf_stream:
continue
# Find matching T-component data
events = [tr.stats.event_id for tr in rf_stream]
transverse_data = station_db[t_channel]
t_stream = rf.RFStream([
tr for tr in transverse_data if tr.stats.event_id in events
]).sort(['back_azimuth'])
# Plot pinwheel of primary and transverse components
fig = rf_plot_utils.plot_rf_wheel([rf_stream, t_stream],
fontscaling=0.8)
fig.set_size_inches(*paper_size_A4)
plt.tight_layout()
plt.subplots_adjust(hspace=0.15, top=0.95, bottom=0.15)
ax = fig.gca()
fig.text(-0.32,
-0.32,
"\n".join(rf_stream[0].stats.processing),
fontsize=6,
transform=ax.transAxes)
pdf.savefig(dpi=300, papertype='a4', orientation='portrait')
plt.close()
num_traces = len(rf_stream)
assert len(t_stream) == num_traces or not t_stream
# Plot RF stack of primary component
trace_ht = min(total_trace_height_inches / num_traces,
max_trace_height)
fig = rf_plot_utils.plot_rf_stack(
rf_stream,
trace_height=trace_ht,
stack_height=fixed_stack_height_inches,
fig_width=paper_size_A4[0])
fig.suptitle("Channel {}".format(rf_stream[0].stats.channel))
# Customize layout to pack to top of page while preserving RF plots aspect ratios
_rf_layout_A4(fig)
# Save to new page in file
pdf.savefig(dpi=300, papertype='a4', orientation='portrait')
plt.close()
# Plot RF stack of transverse component
if t_stream:
fig = rf_plot_utils.plot_rf_stack(
t_stream,
trace_height=trace_ht,
stack_height=fixed_stack_height_inches,
fig_width=paper_size_A4[0])
fig.suptitle("Channel {}".format(t_stream[0].stats.channel))
# Customize layout to pack to top of page while preserving RF plots aspect ratios
_rf_layout_A4(fig)
# Save to new page in file
pdf.savefig(dpi=300, papertype='a4', orientation='portrait')
plt.close()
# end if
# Plot H-k stack using primary RF component
fig, maxima = _produce_hk_stacking(rf_stream,
weighting=hk_weights,
labelling=hk_solution_labels,
V_p=hk_vp)
if save_hk_solution and hk_hpf_freq is None:
hk_soln[st] = maxima
station_coords[st] = (channel_data[0].stats.station_latitude,
channel_data[0].stats.station_longitude)
# end if
paper_landscape = (paper_size_A4[1], paper_size_A4[0])
fig.set_size_inches(*paper_landscape)
# plt.tight_layout()
# plt.subplots_adjust(hspace=0.15, top=0.95, bottom=0.15)
pdf.savefig(dpi=300, papertype='a4', orientation='landscape')
plt.close()
if hk_hpf_freq is not None:
# Repeat H-k stack with high pass filtering
fig, maxima = _produce_hk_stacking(
rf_stream,
weighting=hk_weights,
labelling=hk_solution_labels,
V_p=hk_vp,
filter_options={
'type': 'highpass',
'freq': hk_hpf_freq,
'corners': 1,
'zerophase': True
})
if save_hk_solution:
hk_soln[st] = maxima
station_coords[st] = (
channel_data[0].stats.station_latitude,
channel_data[0].stats.station_longitude)
# end if
fig.set_size_inches(*paper_landscape)
pdf.savefig(dpi=300, papertype='a4', orientation='landscape')
plt.close()
# end if
# end for
pbar.close()
# end with
# Save H-k solutions to CSV file
if hk_soln:
assert len(hk_soln) == len(station_coords)
# Sort H-k solutions by depth from low to high
update_dict = {}
for st, hks in hk_soln.items():
sorted_hks = sorted([tuple(hk) for hk in hks])
update_dict[st] = np.array(
list(station_coords[st]) +
[i for hk in sorted_hks for i in hk])
# end for
hk_soln.update(update_dict)
df = pd.DataFrame.from_dict(hk_soln, orient='index')
colnames = [('H{}'.format(i), 'k{}'.format(i))
for i in range((len(df.columns) - 2) // 2)]
colnames = ['Latitude', 'Longitude'] + list(
itertools.chain.from_iterable(colnames))
df.columns = colnames
csv_fname, _ = os.path.splitext(output_file)
csv_fname += '.csv'
df.index.name = 'Station'
df.to_csv(csv_fname)
def main():
"""Main entry function for RF picking tool.
"""
infile = filedialog.askopenfilename(initialdir=".",
title="Select RF file",
filetypes=(("h5 files", "*.h5"), ))
output_folder = filedialog.askdirectory(
initialdir=os.path.split(infile)[0], title='Select output folder')
if not os.path.isdir(output_folder):
log.info("Creating output folder {}".format(output_folder))
os.makedirs(output_folder, exist_ok=True)
# end if
log.info("Output files will be emitted to {}".format(output_folder))
log.info("Loading %s", infile)
data_all = rf_util.read_h5_rf(infile)
data_dict = rf_util.rf_to_dict(data_all)
stations = sorted(list(data_dict.keys()))
# Assuming same rotation type for all RFs. This is consistent with the existing workflow.
rf_type = data_all[0].stats.rotation
for st in stations:
station_db = data_dict[st]
# Choose RF channel
channel = rf_util.choose_rf_source_channel(rf_type, station_db)
channel_data = station_db[channel]
# Check assumption
for tr in channel_data:
assert tr.stats.rotation == rf_type, 'Mismatching RF rotation type'
# Label and filter quality
rf_util.label_rf_quality_simple_amplitude(rf_type, channel_data)
rf_stream = rf.RFStream([
tr for tr in channel_data if tr.stats.predicted_quality == 'a'
]).sort(['back_azimuth'])
if not rf_stream:
log.info("No data survived filtering for %s, skipping", st)
continue
# Plot RF stack of primary component
fig = rf_plot_utils.plot_rf_stack(rf_stream)
fig.set_size_inches(8, 9)
fig.suptitle("Channel {}".format(rf_stream[0].stats.channel))
ax0 = fig.axes[0]
# Make sure we draw once first before capturing blit background
fig.canvas.draw()
# Disallow resizing to avoid having to handle blitting with resized window.
win = fig.canvas.window()
win.setFixedSize(win.size())
blit_background = fig.canvas.copy_from_bbox(ax0.bbox)
mask = np.array([False] * len(rf_stream))
rect_select = RectangleSelector(ax0,
lambda e0, e1: on_select(e0, e1, mask),
useblit=True,
rectprops=dict(fill=False,
edgecolor='red'))
cid = fig.canvas.mpl_connect(
'button_release_event',
lambda e: on_release(e, ax0, mask, blit_background, rect_select))
plt.show()
fig.canvas.mpl_disconnect(cid)
rect_select = None
selected_event_ids = [
tr.stats.event_id for i, tr in enumerate(rf_stream) if mask[i]
]
log.info("{} streams selected".format(len(selected_event_ids)))
log.info("Selected event ids:")
log.info(selected_event_ids)
network = rf_stream[0].stats.network
outfile = os.path.join(
output_folder,
'.'.join([network, st, channel]) + '_event_mask.txt')
log.info("Writing mask to file {}".format(outfile))
if os.path.exists(outfile):
log.warning("Overwriting existing file {} !".format(outfile))
with open(outfile, 'w') as f:
f.write('\n'.join(selected_event_ids))