from seq1 import Seq print("-- Practice 1, Exercise 9 --") folder = "../session-04/" FILENAME =folder + "U5.txt" # -- Create a Null sequence s = Seq() # -- Initialize the null seq with the given file in fasta format s.read_fasta(FILENAME) print(f"Sequence : (Length: {s.len()}) {s}") print("\tBases: ", s.count()) print("\tRev: ", s.reverse()) print("\tComp:", s.complement())
from seq1 import Seq # -- Create a Null sequence seq_1 = Seq() # -- Create a valid sequence seq_2 = Seq("ACTGA") # -- Create an invalid sequence seq_3 = Seq("Invalid sequence") print("Practice 1, Exercise 8") BASES = ["A", "G", "T", "C"] print("Sequence 1:(length: ", seq_1.len(), ")", seq_1) print("Bases:", seq_1.count()) print("Rev:", seq_1.reverse()) print("Comp:", seq_1.complement()) print("\nSequence 2: (length:", seq_2.len(), ")", seq_2) print("Bases:", seq_2.count()) print("Rev", seq_2.reverse()) print("Comp:", seq_2.complement()) print("\nSequence 3: (length:", seq_3.len(), ")", seq_3) print("Bases:", seq_3.count()) print("Rev:", seq_3.reverse()) print("comp:", seq_3.complement())
# INFO command elif "INFO" in msg: seq_info = Seq(argument_command) count_bases_string = "" for base, count in seq_info.count().items(): s_base = str(base) + ": " + str(count) + " (" + str( round(count / seq_info.len() * 100, 2)) + "%)" + "\n" count_bases_string += s_base response = ("Sequence: " + str(seq_info) + "\n" + "Total length: " + str(seq_info.len()) + "\n" + count_bases_string) elif "COMP" in msg: seq_comp = Seq(argument_command) response = seq_comp.complement() + "\n" elif "REV" in msg: seq_rev = Seq(argument_command) response = seq_rev.reverse() + "\n" elif "GENE" in msg: gene = argument_command s = Seq() s.read_fasta("../Session-04/" + gene + ".txt") response = str(s) + "\n" # -- The message has to be encoded into bytes # Server Console termcolor.cprint(msg[:msg.find(" ")], "green")