def setGeneralInformation(self, aString):
m = GENERAL_INFORMATION_PATTERN.match(aString)
if m:
self.seqlHeader_raw = m.group('seqlHeader_raw')
self.seqlHeader = safeStrip(self.seqlHeader_raw)
self.applicant_raw = m.group('applicant_raw')
self.applicant_val = m.group('applicant')
applicantLines = self.applicant_val.splitlines()
self.applicant = [
a.strip() for a in applicantLines if a.strip() != ''
]
self.title_raw = m.group('title_raw')
self.title = su.inOneLine(safeStrip(m.group('title')))
self.reference_raw = m.group('reference_raw')
self.reference = safeStrip(m.group('reference'))
self.applicationNumber_raw = m.group('applicationNumber_raw')
self.applicationNumber = safeStrip(m.group('applicationNumber'))
self.filingDate = safeStrip(m.group('filingDate'))
self.filingDate_raw = m.group('filingDate_raw')
self.priorities_raw = m.group('priorities_raw')
self.priorities = su.parsePriorities(self.priorities_raw)
self.quantity_raw = m.group('quantity_raw')
self.quantity = safeStrip(m.group('quantity'))
self.software_raw = m.group('software_raw')
self.software = safeStrip(m.group('software'))
self.isSeql = True
else:
print 'File', self.filePath
print 'SequenceListing: No match for general information pattern.'
def setGeneralInformation(self, aString):
m = GENERAL_INFORMATION_PATTERN.match(aString)
if m:
self.seqlHeader_raw = m.group('seqlHeader_raw')
self.seqlHeader = safeStrip(self.seqlHeader_raw)
self.applicant_raw = m.group('applicant_raw')
self.applicant_val = m.group('applicant')
applicantLines = self.applicant_val.splitlines()
self.applicant = [a.strip() for a in applicantLines if a.strip() != '']
self.title_raw = m.group('title_raw')
self.title = su.inOneLine(safeStrip(m.group('title')))
self.reference_raw = m.group('reference_raw')
self.reference = safeStrip(m.group('reference'))
self.applicationNumber_raw = m.group('applicationNumber_raw')
self.applicationNumber = safeStrip(m.group('applicationNumber'))
self.filingDate = safeStrip(m.group('filingDate'))
self.filingDate_raw = m.group('filingDate_raw')
self.priorities_raw = m.group('priorities_raw')
self.priorities = su.parsePriorities(self.priorities_raw)
self.quantity_raw = m.group('quantity_raw')
self.quantity = safeStrip(m.group('quantity'))
self.software_raw = m.group('software_raw')
self.software = safeStrip(m.group('software'))
self.isSeql = True
else:
print 'File', self.filePath
print 'SequenceListing: No match for general information pattern.'
def test_parsePriorities(self):
ins = '<150> 61536558 - prio1\r\n\r\n<151> 2001-01-01\r\n\r\n'
exp = [('61536558 - prio1', '2001-01-01')]
self.assertEqual(exp, seqlutils.parsePriorities(ins))
def test_parsePriorities(self):
ins = '<150> 61536558 - prio1\r\n\r\n<151> 2001-01-01\r\n\r\n'
exp = [('61536558 - prio1', '2001-01-01')]
self.assertEqual(exp, seqlutils.parsePriorities(ins))