def setUpClass(cls):
app.config["TESTING"] = True
app.config["AUTH_PROVIDER"] = "none"
app.config[
"SQLALCHEMY_DATABASE_URI"] = "sqlite:////tmp/datalayer-test.db"
# import pdb; pdb.set_trace()
api.add_namespace(protocols)
api.add_namespace(runs)
from flask import jsonify, request
from flask_restx import Namespace, Resource
from server import app, api
from server.routes import prometheus
from server.services import eval_service
calc_namespace = Namespace('calculation', description='simple calculator')
api.add_namespace(calc_namespace)
@calc_namespace.route("")
class Calculator(Resource):
@api.param('expr', description='expression', type='string')
@prometheus.track_requests
def get(self):
return jsonify({"result": eval_service.safe_eval(request.args.get("expr"))})
from flask import jsonify
from flask_restx import Namespace, Resource
from server import app, api
from server.routes import prometheus
health_namespace = Namespace('health', description='Return Application Health')
api.add_namespace(health_namespace)
@health_namespace.route("")
class Health(Resource):
@prometheus.track_requests
def get(self):
state = {"status": "UP"}
return jsonify(state)
from flask_restx import abort, Namespace, Resource, fields
from server import app, api
from server.routes import prometheus
from server.services import user_service
LOG = logging.getLogger(__name__)
# Only doing this as we're not using a database
# this is NOT recommended
user_data = user_service.UserService()
user_namespace = Namespace('user',
description='Interface for User Resource')
api.add_namespace(user_namespace)
user_fields = api.model('User',
{
'name': fields.String
})
@user_namespace.route("")
class User(Resource):
@prometheus.track_requests
@api.param('id', description='user id', type='integer')
def get(self):
if not request.args.get('id'):
response = user_data.get_users()
import config
from server import server, api
# Import Models and Schemas
from models import ToDo
from schemas import todos_schema, todo_schema
# Import Routes
from routes import todosRoute
# Import Error Handlers
from routes import errorHandlers
# Register Error Handlers
server.register_blueprint(errorHandlers)
# Add Routes to API
api.add_namespace(todosRoute, path='/todos')
# Start Server
if __name__ == '__main__':
server.run(port=3000, debug=config.debug)
"""Sets up a flask-restx server for running the swabseq analysis R-script."""
from server import app, api
from api.swabseq import api as swabseq
from api.health import api as server_health
api.add_namespace(swabseq)
api.add_namespace(server_health)
if __name__ == '__main__':
app.run()