def mfold_task_result(task_id):
"""Handler for getting mfold result from just a task id
Args:
task_id: Id of task generated via RESTful API
Returns:
Json object of status or sends zipped file
"""
status = get_async_result(delegate, task_id)
if status['status'] == 'fail':
return jsonify({
'status': 'error',
'error': 'Task is not ready or has failed'
}), 400
elif status['status'] == 'error':
return jsonify(status), 400
zip_file = get_zip_path(task_id)
try:
return send_file(zip_file)
except IOError:
return jsonify({
'status': 'error',
'error': 'File does not exist'
}), 400
def mfold_zip(path, task_id):
"""Function to check if mfold task of given ID is done
and sending the result in zip file
Args:
path: path where we look for folded structures
task_id: Id of task generated via RESTful API
Returns:
Json object of status or sends zipped file
"""
status = get_async_result(delegate_mfold, task_id)
if status['status'] == 'fail':
return jsonify({
'status': 'error',
'error': 'Task is not ready or has failed'
})
elif status['status'] == 'error':
return jsonify(status)
zip_file = get_zip_path(path, task_id)
try:
return send_file(zip_file)
except IOError:
return jsonify({'status': 'error', 'error': 'File does not exist'})
def mfold_zip(path, task_id):
"""Function to check if mfold task of given ID is done
and sending the result in zip file
Args:
path: path where we look for folded structures
task_id: Id of task generated via RESTful API
Returns:
Json object of status or sends zipped file
"""
status = get_async_result(delegate_mfold, task_id)
if status['status'] == 'fail':
return jsonify({
'status': 'error', 'error': 'Task is not ready or has failed'
})
elif status['status'] == 'error':
return jsonify(status)
zip_file = get_zip_path(path, task_id)
try:
return send_file(zip_file)
except IOError:
return jsonify({
'status': 'error', 'error': 'File does not exist'
})
def offtarget_task_result(db, task_id):
function = OFFTARGET_FUNCTIONS.get(db)
result = get_async_result(function, task_id)
if result['status'] != 'ok':
return jsonify(result), 400
return jsonify(result)
def mfold_task_status(task_id):
"""Mfold status getter
Args:
task_id: Id of task generated via RESTful API
Returns:
Json object with status of specific id
"""
return jsonify(get_async_result(delegate_mfold, task_id, only_status=True))
def mfold_task_status(task_id):
"""Mfold status getter
Args:
task_id: Id of task generated via RESTful API
Returns:
Json object with status of specific id
"""
return jsonify(get_async_result(delegate_mfold, task_id, only_status=True))
def transcript_task_result(task_id):
"""Handler to get results of task which creates sh-miR(s) from transcript
Args:
task_id: Id of task generated via RESTful API
Returns:
Json object with list of sh-miRs in structure:
[sh-miR, score, pdf(id to download pdf via mfold), sequence and backbone name...]
"""
result = get_async_result(shmir_from_transcript_sequence, task_id)
return jsonify(result)
def designer_task_status(task_id):
"""Handler to check status of task which creates sh-miR from siRNA
Args:
task_id: Id of task generated via RESTful API
Returns:
Json object with status of given task_id
"""
return jsonify(
get_async_result(shmir_from_sirna_score, task_id, only_status=True))
def transcript_task_result(task_id):
"""Handler to get results of task which creates sh-miR(s) from transcript
Args:
task_id: Id of task generated via RESTful API
Returns:
Json object with list of sh-miRs in structure:
[sh-miR, score, pdf(id to download pdf via mfold), sequence and backbone name...]
"""
result = get_async_result(shmir_from_transcript_sequence, task_id)
return jsonify(result)
def designer_task_result(task_id):
"""Handler to give result of sh-miR(s) created from siRNA
Args:
task_id: Id of task generated via RESTful API
Returns:
Json object with sh-miRs created from siRNA:
[(score, sh-miR, bacbone name, pdf(id to download pdf via mfold)...]
"""
result = get_async_result(shmir_from_sirna_score, task_id)
return jsonify(result)
def transcript_task_status(task_id):
"""Handler to check status of task which creates sh-miR from transcript
Args:
task_id: Id of task generated via RESTful API
Returns:
Json object with status of given task_id
"""
return jsonify(get_async_result(
shmir_from_transcript_sequence, task_id, only_status=True)
)
def designer_task_result(task_id):
"""Handler to give result of sh-miR(s) created from siRNA
Args:
task_id: Id of task generated via RESTful API
Returns:
Json object with sh-miRs created from siRNA:
[(score, sh-miR, bacbone name, pdf(id to download pdf via mfold)...]
"""
result = get_async_result(shmir_from_sirna_score, task_id)
return jsonify(result)
def designer_task_status(task_id):
"""Handler to check status of task which creates sh-miR from siRNA
Args:
task_id: Id of task generated via RESTful API
Returns:
Json object with status of given task_id
"""
return jsonify(get_async_result(
shmir_from_sirna_score, task_id, only_status=True)
)
def transcript_task_status(task_id):
"""Handler to check status of task which creates sh-miR from transcript
Args:
task_id: Id of task generated via RESTful API
Returns:
Json object with status of given task_id
"""
return jsonify(
get_async_result(shmir_from_transcript_sequence,
task_id,
only_status=True))
def offtarget_task_status(db, task_id):
function = OFFTARGET_FUNCTIONS.get(db)
return jsonify(get_async_result(
function, task_id, only_status=True)
)
