def __init__(self, parent_view): HasErrorMessages.__init__(self) self.parent_view = parent_view self.username = None self.password = None
def __init__(self, parent): HasErrorMessages.__init__(self) self.parent = parent self.id = None self.isEditing = False self.clear()
def load(self, request, *args, **kwargs): HasErrorMessages.clearErrors(self) HasWorkingModel.load(self, request, *args, **kwargs) if self.isModelLoaded(): self.listOfCompartments = self.getModel().listOfCompartments self.listOfUnits = self.getModel().listOfUnitDefinitions
def load(self, request, *args, **kwargs): HasErrorMessages.clearErrors(self) HasWorkingModel.load(self, request, *args, **kwargs) if self.isModelLoaded(): self.loadRules() self.loadGlobalVariables()
def load(self, request, *args, **kwargs): HasErrorMessages.clearErrors(self) HasWorkingModel.load(self, request, *args, **kwargs) if self.isModelLoaded(): self.loadSpecies() self.loadCompartments() self.loadUnits()
def __init__(self, **kwargs): TemplateView.__init__(self, **kwargs) HasErrorMessages.__init__(self) self.computations = None self.computationsStatus = None self.conts = None self.optims = None
def load(self, request, *args, **kwargs): HasErrorMessages.clearErrors(self) HasWorkingModel.load(self, request, *args, **kwargs) if self.isModelLoaded(): self.loadParameters() self.loadReactions() self.loadUnits()
def __init__(self, **kwargs): TemplateView.__init__(self, **kwargs) HasErrorMessages.__init__(self) HasWorkingModel.__init__(self) self.modelHistory = None self.modelPublication = None self.form = ModelAnnotationsForm(self)
def __init__(self, **kwargs): TemplateView.__init__(self, **kwargs) HasErrorMessages.__init__(self) HasWorkingModel.__init__(self) self.listOfVariables = None self.listOfEvents = None self.form = ModelEventsForm(self)
def __init__(self, parent): HasErrorMessages.__init__(self) self.parent = parent self.parameter = None self.fromValue = None self.toValue = None self.ds = None self.MaxSteps = None
def __init__(self, **kwargs): TemplateView.__init__(self, **kwargs) HasWorkingProject.__init__(self) HasUserLoggedIn.__init__(self) HasErrorMessages.__init__(self) self.listOfModels = None self.fileUploadForm = DocumentForm()
def __init__(self, **kwargs): TemplateView.__init__(self, **kwargs) HasWorkingModel.__init__(self) HasErrorMessages.__init__(self) self.listOfCompartments = None self.listOfUnits = None self.form = ModelCompartmentsForm(self)
def __init__(self, **kwargs): TemplateView.__init__(self, **kwargs) HasWorkingModel.__init__(self) HasErrorMessages.__init__(self) self.listOfConstants = None self.listOfVariables = None self.listComputations = None self.computation = None
def __init__(self, **kwargs): TemplateView.__init__(self, **kwargs) HasWorkingModel.__init__(self) HasErrorMessages.__init__(self) self.listOfConstants = None self.listComputations = None self.computation = None self.form = AnalyseBifurcationsForm(self)
def load(self, request, *args, **kwargs): HasErrorMessages.clearErrors(self) HasWorkingModel.load(self, request, *args, **kwargs) if self.isModelLoaded(): self.loadSubmodels() self.loadProjectModels(request) self.loadConversionFactors() self.loadObjects() self.loadSubstitutions()
def __init__(self, **kwargs): TemplateView.__init__(self, **kwargs) HasErrorMessages.__init__(self) HasWorkingModel.__init__(self) self.listOfParameters = None self.listOfReactions = None self.listOfUnits = None self.form = ModelParametersForm(self)
def __init__(self, parent_view): HasErrorMessages.__init__(self) self.parent_view = parent_view self.username = None self.firstname = None self.lastname = None self.email = None self.organisation = None self.password1 = None self.password2 = None
def __init__(self, **kwargs): TemplateView.__init__(self, **kwargs) HasErrorMessages.__init__(self) HasWorkingModel.__init__(self) self.listOfUnits = None self.listOfParameters = None self.sbmlLevels = None self.modelHistory = None self.modelPublication = None self.form = ModelMiscForm(self)
def load(self, request, *args, **kwargs): HasErrorMessages.clearErrors(self) HasWorkingModel.load(self, request, *args, **kwargs) if len(args) > 0: self.setModel(request, int(args[0])) if self.isModelLoaded(): self.form.load() self.modelHistory = self.getModel().modelHistory if len(self.getModel().getAnnotation().getIsDescribedBy()) > 0: self.modelPublication = self.getModel().getAnnotation().getIsDescribedBy()[0]
def load(self, request, *args, **kwargs): HasErrorMessages.clearErrors(self) HasWorkingModel.load(self, request, *args, **kwargs) if len(args) > 0: self.setModel(request, int(args[0])) if self.isModelLoaded(): self.listOfUnits = self.getModel().listOfUnitDefinitions self.listOfParameters = self.getModel().listOfParameters self.sbmlLevels = self.getModel().getSbmlLevels() self.form.load()
def load(self, request, *args, **kwargs): HasErrorMessages.clearErrors(self) HasWorkingModel.load(self, request, *args, **kwargs) if len(args) > 0: self.setModel(request, int(args[0])) if self.isModelLoaded(): self.form.load() self.modelHistory = self.getModel().modelHistory if len(self.getModel().getAnnotation().getIsDescribedBy()) > 0: self.modelPublication = self.getModel().getAnnotation( ).getIsDescribedBy()[0]
def __init__(self, **kwargs): TemplateView.__init__(self, **kwargs) HasErrorMessages.__init__(self) HasWorkingModel.__init__(self) self.listOfVariables = None self.listOfRules = None self.ruleTypes = [ "Algebraic rule", "Assignment rule", "Rate rule", "Initial assignment" ] self.form = ModelRulesForm(self)
def __init__(self, **kwargs): TemplateView.__init__(self, **kwargs) HasErrorMessages.__init__(self) HasWorkingModel.__init__(self) self.listOfReactions = None self.listOfSpecies = None self.listOfParameters = None self.listOfKineticLaws = None self.reactionTypes = KineticLaw.reactionTypes self.parametersList = KineticLaw.parametersList self.allowReversibleList = KineticLaw.allowReversibleList self.form = ModelReactionsForm(self)
def load(self, request, *args, **kwargs): HasErrorMessages.clearErrors(self) HasWorkingModel.load(self, request, *args, **kwargs) if self.isModelLoaded(): self.listOfEvents = self.getModel().listOfEvents self.getModel().listOfVariables.classifyVariables() self.listOfVariables = [] for variable in self.getModel().listOfVariables: if ((variable.isParameter() and variable.isGlobal()) or variable.isSpecies() or variable.isCompartment() or variable.isStoichiometry()): self.listOfVariables.append(variable)
def __init__(self, **kwargs): TemplateView.__init__(self, **kwargs) HasErrorMessages.__init__(self) HasWorkingModel.__init__(self) self.listOfVariables = None self.listOfRules = None self.ruleTypes = ["Algebraic rule", "Assignment rule", "Rate rule", "Initial assignment"] self.form = ModelRulesForm(self)
def __init__(self, **kwargs): TemplateView.__init__(self, **kwargs) HasErrorMessages.__init__(self) # "email_address": "*****@*****.**", # "email_use_tls": true, # "email_host": "smtp.gmail.com", # "email_port": "587", # "email_user": "******", # "email_password": "******", self.mailAddress = None self.mailUseTLS = None self.mailHost = None self.mailPort = None self.mailUser = None
def get_context_data(self, **kwargs): kwargs = HasWorkingModel.get_context_data(self, **kwargs) kwargs = HasErrorMessages.get_context_data(self, **kwargs) kwargs['list_of_submodels'] = self.listOfSubmodels kwargs['list_of_submodels_names'] = [ submodel.getNameOrSbmlId() for submodel in self.listOfSubmodels ] kwargs['list_of_substitutions'] = self.listOfSubstitutions kwargs['list_of_project_models'] = [ str(pm.name) for pm in self.listOfProjectModels ] kwargs['list_of_submodels_refs'] = self.listOfSubmodelsRefs kwargs['list_of_submodel_types'] = self.listOfSubmodelTypes kwargs['submodel_types'] = [ "Internal model definition", "External model definition" ] kwargs['list_of_objects'] = self.listOfObjects kwargs['list_of_conversion_factors'] = [ conv_factor.getNameOrSbmlId() for conv_factor in self.listOfConversionFactors ] kwargs['form'] = self.form kwargs['form_subs'] = self.formSubstitutions return kwargs
def load(self, request, *args, **kwargs): HasErrorMessages.clearErrors(self) HasWorkingModel.load(self, request, *args, **kwargs) if len(args) > 0: self.setModel(request, int(args[0])) if self.isModelLoaded(): # self.listOfUnits = self.getModel().listOfUnitDefinitions.values() # self.listOfParameters = self.getModel().listOfParameters.values() # self.sbmlLevels = self.getModel().getSbmlLevels() self.form.load() self.modelHistory = self.getModel().modelHistory if len(self.getModel().getAnnotation().getIsDescribedBy()) > 0: self.modelPublication = self.getModel().getAnnotation().getIsDescribedBy()[0]
def get_context_data(self, **kwargs): kwargs = HasErrorMessages.get_context_data(self, **kwargs) kwargs['computations'] = self.computations kwargs['comp_statuses'] = self.computationsStatus kwargs['conts'] = self.conts kwargs['optims'] = self.optims return kwargs
def __init__(self, parent_view): HasErrorMessages.__init__(self) self.parent_view = parent_view self.selectedSpeciesIds = None self.selectedReactionsIds = None # self.experimentId = None self.timeMin = None # self.timeEch = None self.timeMax = None # self.showObservations = None self.steady_states = [] self.speciesId = None
def __init__(self, parent_view): HasErrorMessages.__init__(self) self.parent_view = parent_view self.simulationName = None self.simulationModelSnapshot = None self.selectedSpeciesIds = None self.selectedReactionsIds = None self.experimentId = None self.timeMin = None self.timeEch = None self.timeMax = None self.showObservations = None
def get_context_data(self, **kwargs): kwargs = HasWorkingProject.get_context_data(self, **kwargs) kwargs = HasErrorMessages.get_context_data(self, **kwargs) kwargs['plots_2d'] = self.listOfPlots2D kwargs['colors'] = Settings.default_colors return kwargs
def __init__(self, parent_view): HasErrorMessages.__init__(self) self.parent_view = parent_view self.simulationName = None self.simulationModelSnapshot = None self.selectedSpeciesIds = None self.selectedReactionsIds = None # self.timeMin = None self.timeMax = None self.steady_states_str = None self.steady_states = [] self.speciesId = None self.speciesName = None
def get_context_data(self, **kwargs): kwargs = HasWorkingModel.get_context_data(self, **kwargs) kwargs = HasErrorMessages.get_context_data(self, **kwargs) kwargs['list_of_compartments'] = self.listOfCompartments kwargs['list_of_units'] = [unit.getName() for unit in self.listOfUnits] kwargs['form'] = self.form return kwargs
def get_context_data(self, **kwargs): kwargs = HasErrorMessages.get_context_data(self, **kwargs) kwargs = HasWorkingModel.get_context_data(self, **kwargs) kwargs['list_of_events'] = self.listOfEvents kwargs['list_of_variables'] = [var.getNameOrSbmlId() for var in self.listOfVariables] kwargs['form'] = self.form return kwargs
def get_context_data(self, **kwargs): kwargs = HasWorkingProject.get_context_data(self, **kwargs) kwargs = HasErrorMessages.get_context_data(self, **kwargs) kwargs['form'] = self.fileUploadForm kwargs['sbml_models'] = self.listOfModels return kwargs
def __init__(self, **kwargs): TemplateView.__init__(self, **kwargs) HasErrorMessages.__init__(self) HasWorkingModel.__init__(self) self.listOfSubmodels = [] self.listOfSubmodelTypes = [] self.listOfSubstitutions = None self.listOfProjectModels = None self.listOfSubmodelsRefs = None self.listOfObjects = None self.listOfObjectsMetaIds = None self.listOfConversionFactors = None self.form = ModelSubmodelsForm(self) self.formSubstitutions = ModelSubmodelSubstitutionForm(self)