def analyze(output_dir):
dirr = output_dir + "instances/"
t0 = ptime()
node_info, iters, leaf_metric = read_in(dirr)
# node_info = {'id':names, 'degree':deg, 'benefit':B, 'damage':D, 'solution':soln}
# 'benefit' = [file#] [node#]
t1 = ptime()
print("\nRead_in took " + str(t1 - t0))
#TEMP FOR HUBS:
#leaf_metric = "RGAR"
t0 = ptime()
freq, maxBD = extract_freq(node_info)
t1 = ptime()
print("\nExtract_freq took " + str(t1 - t0))
t0 = ptime()
Pr = BD_probability(maxBD)
t1 = ptime()
print("\nProbability took " + str(t1 - t0))
# Pr [B] [D]
t0 = ptime()
BD_leaf_fitness = calc_BD_leaf_fitness(
leaf_metric, maxBD) #derive leaf metric from file name?
# BD_leaf_fitness [B] [D]
t1 = ptime()
print("\nCalc_leaf_fitness took " + str(t1 - t0))
t0 = ptime()
#ETB_score = derive_ETB(node_info, maxBD)
# ETB_score [file#] [B] [D]
t1 = ptime()
print("\nDerive_ETB took " + str(t1 - t0))
####PLOTS####
if not os.path.exists(output_dir + "/BD_plots/"):
os.makedirs(output_dir + "/BD_plots/")
if not os.path.exists(output_dir + "/slice_plots/"):
os.makedirs(output_dir + "/slice_plots/")
t0 = ptime()
plot_dir = output_dir + "BD_plots/"
BD_plots.freq(plot_dir, freq, iters)
BD_plots.probability(plot_dir, Pr)
BD_plots.leaf_fitness(plot_dir, BD_leaf_fitness)
BD_plots.Pr_leaf_fitness(plot_dir, Pr, BD_leaf_fitness)
#BD_plots.ETB(plot_dir, ETB_score, iters)
plot_dir = output_dir + "slice_plots/"
slice_plots.leaf_fitness(plot_dir, Pr, BD_leaf_fitness, None)
#slice_plots.ETB(plot_dir, ETB_score, iters)
t1 = ptime()
print("\nPlots took " + str(t1 - t0))
def analyze(output_dir):
dirr = output_dir + "instances/"
t0 = ptime()
node_info, iters, leaf_metric = read_in(dirr)
t1 = ptime()
print("\nRead_in took " + str(t1 - t0))
t0 = ptime()
freq, maxBD = extract_freq(node_info)
t1 = ptime()
print("\nExtract_freq took " + str(t1 - t0))
t0 = ptime()
Pr = BD_probability(maxBD)
t1 = ptime()
print("\nProbability took " + str(t1 - t0))
t0 = ptime()
BD_leaf_fitness = calc_BD_leaf_fitness(
leaf_metric, maxBD) #derive leaf metric from file name?
t1 = ptime()
print("\nCalc_leaf_fitness took " + str(t1 - t0))
t0 = ptime()
t1 = ptime()
print("\nDerive_ETB took " + str(t1 - t0))
####PLOTS####
if not os.path.exists(output_dir + "/BD_plots/"):
os.makedirs(output_dir + "/BD_plots/")
if not os.path.exists(output_dir + "/slice_plots/"):
os.makedirs(output_dir + "/slice_plots/")
t0 = ptime()
plot_dir = output_dir + "BD_plots/"
BD_plots.freq(plot_dir, freq, iters)
BD_plots.probability(plot_dir, Pr)
BD_plots.leaf_fitness(plot_dir, BD_leaf_fitness)
BD_plots.Pr_leaf_fitness(plot_dir, Pr, BD_leaf_fitness)
#BD_plots.ETB(plot_dir, ETB_score, iters)
plot_dir = output_dir + "slice_plots/"
slice_plots.leaf_fitness(plot_dir, Pr, BD_leaf_fitness, None)
#slice_plots.ETB(plot_dir, ETB_score, iters)
t1 = ptime()
print("\nPlots took " + str(t1 - t0))
'solution': soln
}
return node_info, iters, leaf_metric
if __name__ == "__main__":
#first bash arg should be parent directory, then each child directory
dirr_base = "/home/2014/choppe1/Documents/EvoNet/virt_workspace/data/output/"
if (sys.argv[1] == 'degreeFitness'):
if not os.path.exists(dirr_base + "/degree_fitness/"):
os.makedirs(dirr_base + "/degree_fitness/")
for arg in sys.argv[2:]:
leaf_metric = arg
Pr = BD_probability(maxBD=20)
BD_leaf_fitness = calc_BD_leaf_fitness(leaf_metric, maxBD=20)
slice_plots.leaf_fitness(dirr_base + "/degree_fitness/", Pr,
BD_leaf_fitness, leaf_metric)
else:
dirr_parent = sys.argv[1]
dirr_base += dirr_parent
for arg in sys.argv[2:]:
print("Plotting dirr " + str(arg))
dirr_addon = arg
dirr = dirr_base + dirr_addon + "/"
analyze(dirr)
print("Finished analyzing instances.")