def testReturnsDataWithFloatingPointForce(self):
params = dict(
construct='SJF4', slide=1, mol=3,
pull=3, force=10.5, min='2')
finfo = fio.parseFilename(
self.filenameFromParams(**params))
self.checkReturnData(params, finfo)
def testReturnsFilenameData(self):
params = dict(
construct='SJF4', slide=1, mol=3,
pull=3, force=0, min='2')
finfo = fio.parseFilename(
self.filenameFromParams(**params))
self.checkReturnData(params, finfo)
def testReturnsDataWithFloatingPointForce(self):
params = dict(construct='SJF4',
slide=1,
mol=3,
pull=3,
force=10.5,
min='2')
finfo = fio.parseFilename(self.filenameFromParams(**params))
self.checkReturnData(params, finfo)
def testReturnsFilenameData(self):
params = dict(construct='SJF4',
slide=1,
mol=3,
pull=3,
force=0,
min='2')
finfo = fio.parseFilename(self.filenameFromParams(**params))
self.checkReturnData(params, finfo)
def byMolecule(directory='./', exp_type=experiment.Pulling, fromMatch=('',), **metadata):
"""Return a generator (iterator) which yields experiment.List for all molecules in given directory."""
assert issubclass(exp_type, experiment.Base)
assert isinstance(fromMatch, (tuple, list))
assert isinstance(directory, str)
with ChangeDirectory(directory):
flist = filter(exp_type.filenameMatchesType,
experiment.filelist(*fromMatch))
filelist = groupby(flist, lambda f: fileIO.parseFilename(f)[:4])
for mol, group in filelist:
with ChangeDirectory(directory):
dirname = path.basename(directory)
date_ = dir_to_date(dirname)
metadata.setdefault('date', date_)
yield experiment.List(
map(lambda f: exp_type.fromFile(f, **metadata), group))
def byMolecule(directory='./',
exp_type=experiment.Pulling,
fromMatch=('', ),
**metadata):
"""Return a generator (iterator) which yields experiment.List for all molecules in given directory."""
assert issubclass(exp_type, experiment.Base)
assert isinstance(fromMatch, (tuple, list))
assert isinstance(directory, str)
with ChangeDirectory(directory):
flist = filter(exp_type.filenameMatchesType,
experiment.filelist(*fromMatch))
filelist = groupby(flist, lambda f: fileIO.parseFilename(f)[:4])
for mol, group in filelist:
with ChangeDirectory(directory):
dirname = path.basename(directory)
date_ = dir_to_date(dirname)
metadata.setdefault('date', date_)
yield experiment.List(
map(lambda f: exp_type.fromFile(f, **metadata), group))
def testReturnsNoneWithBadFilename(self): fail = 'SJF4_0.5nM_s1m3_2hours.fret' finfo = fio.parseFilename(fail) self.assertEquals(finfo, None)
def testReturnsNoneWithBadFilename(self):
fail = 'SJF4_0.5nM_s1m3_2hours.fret'
finfo = fio.parseFilename(fail)
self.assertEquals(finfo, None)