def exportdata(options):
"""
Function used to export data.
"""
print '\n-------------------------------\nExporting information' + \
'\n-------------------------------\n'
if(options.runname == None):
exportpath = '/'
else:
exportpath = options.runname
if(options.infile == None):
print "Specify the in file (--infile filename)"
exit()
if(options.outdir == None):
print "Specify the out file (--exportdir directoryname)"
exit()
extension = os.path.splitext(options.infile)
extension = extension[1]
if extension != '.h5':
print "Can only export .h5 files: " + options.infile
exit()
else:
theReader = SofiePyTableAccess(options.infile, runName='/')
theRuns = theReader.getRuns(exportpath)
for run in theRuns:
exportFile = os.sep.join([options.outdir] + run.split('/')) + '.csv'
if not os.path.isdir(os.path.dirname(exportFile)):
os.makedirs(os.path.dirname(exportFile))
if os.path.isfile(exportFile):
os.unlink(exportFile)
print '\n-------------------------------\n' + \
'Exporting: ' + run + ' to ' + str(exportFile)
theReader.setTable(run, '')
fieldNames = theReader.getTableStructure(asList=True)
csvWriter = SofieCsvAccess(exportFile, fieldNames)
for row in theReader:
logging.debug("Read New Row")
parsed = csv_sample_interpret(row)
csvWriter.write(parsed)
#aparsedwritercsv = SofieCsvAccess(csvOutParsed)
csvWriter.close()
theReader.close()
