def test_practitioner_fail_on_fhir_validation(spark_session: SparkSession) -> None:
test_path: Path = Path(__file__).parent.joinpath("./")
# setup servers
test_name = "practitioner_fail_on_fhir_validation"
test_input = FileInput()
test_fhir = FhirCalls()
logger = get_logger(__name__)
mock_server_url = "http://mock-server:1080"
mock_client = MockServerFriendlyClient(mock_server_url)
mock_client.clear(f"/{test_name}/")
mock_client.expect_default()
params = {
"test_name": test_name,
"mock_server_url": mock_server_url,
}
test_validator = FhirValidator(
related_inputs=test_fhir,
related_file_inputs=test_input,
mock_server_url=mock_server_url,
test_name=test_name,
fhir_validation_url="http://fhir:3000/4_0_0",
)
with pytest.raises(AssertionError, match=r"Failed validation for resource*"):
SparkPipelineFrameworkTestRunnerV2(
spark_session=spark_session,
test_path=test_path,
test_name=test_name,
test_validators=[test_validator],
logger=logger,
auto_find_helix_transformer=False,
helix_transformers=[
FeaturesDoctorFeaturePractitionerFailOnFhirValidationV1
],
test_inputs=[test_input],
temp_folder="output/temp",
helix_pipeline_parameters=params,
).run_test2()
def test_doctor_feature_practitioner(spark_session: SparkSession) -> None:
data_dir: Path = Path(__file__).parent.joinpath("./")
test_name = "test_doctor_feature_practitioner"
test_input = input_types.FileInput()
test_fhir = input_types.FhirCalls()
logger = get_logger(__name__)
mock_server_url = "http://mock-server:1080"
mock_client = MockServerFriendlyClient(mock_server_url)
mock_client.clear(f"/{test_name}/")
mock_client.expect_default()
params = {
"test_name": test_name,
"mock_server_url": mock_server_url,
}
test_validator = FhirValidator(
related_inputs=test_fhir,
related_file_inputs=test_input,
mock_server_url=mock_server_url,
test_name=test_name,
fhir_validation_url="http://fhir:3000/4_0_0",
)
SparkPipelineFrameworkTestRunnerV2(
spark_session=spark_session,
test_path=data_dir,
test_name=test_name,
test_validators=[
test_validator,
# OutputFileValidator(related_inputs=test_input, sort_output_by=["id"]),
],
logger=logger,
test_inputs=[test_input],
temp_folder="output/temp",
mock_client=mock_client,
helix_pipeline_parameters=params,
).run_test2()