def test_basic_resource_get_downsampled_voxel_dims_anisotropic(self):
"""Test downsample voxel dims anisotropic
Returns:
None
"""
setup_data = get_anno_dict()
resource = BossResourceBasic(setup_data)
voxel_dims = resource.get_downsampled_voxel_dims()
self.assertEqual(len(voxel_dims), setup_data["experiment"]['num_hierarchy_levels'])
self.assertEqual(voxel_dims[0], [4, 4, 35])
self.assertEqual(voxel_dims[4], [64, 64, 35])
def test_basic_resource_get_downsampled_voxel_dims_anisotropic(self):
"""Test downsample voxel dims anisotropic
Returns:
None
"""
setup_data = get_anno_dict()
resource = BossResourceBasic(setup_data)
voxel_dims = resource.get_downsampled_voxel_dims()
self.assertEqual(len(voxel_dims), setup_data["experiment"]['num_hierarchy_levels'])
self.assertEqual(voxel_dims[0], [4, 4, 35])
self.assertEqual(voxel_dims[4], [64, 64, 35])
def test_basic_resource_get_downsampled_voxel_dims_isotropic(self):
"""Test downsample voxel dims isotropic
Returns:
None
"""
setup_data = get_anno_dict()
setup_data['coord_frame']['x_voxel_size'] = 6
setup_data['coord_frame']['y_voxel_size'] = 6
setup_data['coord_frame']['z_voxel_size'] = 6
setup_data['experiment']['hierarchy_method'] = "isotropic"
resource = BossResourceBasic(setup_data)
voxel_dims = resource.get_downsampled_voxel_dims()
self.assertEqual(len(voxel_dims), setup_data["experiment"]['num_hierarchy_levels'])
self.assertEqual(voxel_dims[0], [6, 6, 6])
self.assertEqual(voxel_dims[3], [48, 48, 48])
def test_basic_resource_get_downsampled_voxel_dims_anisotropic_iso(self):
"""Test downsample voxel dims anisotropic with iso flag
Returns:
None
"""
setup_data = get_anno_dict()
resource = BossResourceBasic(setup_data)
voxel_dims = resource.get_downsampled_voxel_dims(iso=True)
self.assertEqual(len(voxel_dims), setup_data["experiment"]['num_hierarchy_levels'])
self.assertEqual(voxel_dims[0], [4, 4, 35])
self.assertEqual(voxel_dims[1], [8, 8, 35])
self.assertEqual(voxel_dims[2], [16, 16, 35])
self.assertEqual(voxel_dims[3], [32, 32, 35])
self.assertEqual(voxel_dims[4], [64, 64, 70])
self.assertEqual(voxel_dims[5], [128, 128, 140])
def test_basic_resource_get_downsampled_voxel_dims_isotropic(self):
"""Test downsample voxel dims isotropic
Returns:
None
"""
setup_data = get_anno_dict()
setup_data['coord_frame']['x_voxel_size'] = 6
setup_data['coord_frame']['y_voxel_size'] = 6
setup_data['coord_frame']['z_voxel_size'] = 6
setup_data['experiment']['hierarchy_method'] = "isotropic"
resource = BossResourceBasic(setup_data)
voxel_dims = resource.get_downsampled_voxel_dims()
self.assertEqual(len(voxel_dims), setup_data["experiment"]['num_hierarchy_levels'])
self.assertEqual(voxel_dims[0], [6, 6, 6])
self.assertEqual(voxel_dims[3], [48, 48, 48])
def test_basic_resource_get_downsampled_voxel_dims_anisotropic_iso(self):
"""Test downsample voxel dims anisotropic with iso flag
Returns:
None
"""
setup_data = get_anno_dict()
resource = BossResourceBasic(setup_data)
voxel_dims = resource.get_downsampled_voxel_dims(iso=True)
self.assertEqual(len(voxel_dims), setup_data["experiment"]['num_hierarchy_levels'])
self.assertEqual(voxel_dims[0], [4, 4, 35])
self.assertEqual(voxel_dims[1], [8, 8, 35])
self.assertEqual(voxel_dims[2], [16, 16, 35])
self.assertEqual(voxel_dims[3], [32, 32, 35])
self.assertEqual(voxel_dims[4], [64, 64, 70])
self.assertEqual(voxel_dims[5], [128, 128, 140])
