def result():
if request.method == 'POST' : #post the complex results to the web page
theQuery=""
protdata=[]
listC=[]
exception=""
# pass the list of the results
listC,exception,theQuery=sqlalchemy_query.search_results(request) #sending to search functions in class sqlalchemy_query
i=0
if(listC):
for c in listC:
i=i+1
linkPA="http://www.rcsb.org/pdb/explore/explore.do?structureId="+c.pdb_prot_A[0:4]
linkPB="http://www.rcsb.org/pdb/explore/explore.do?structureId="+c.pdb_prot_B[0:4]
c.accession_prot_A=c.accession_prot_A.replace("-","")
c.accession_prot_B=c.accession_prot_B.replace("-","")
linkAccessionPA_1="http://www.uniprot.org/uniprot/"+c.accession_prot_A
linkAccessionPA_2=""
accA=[c.accession_prot_A,""]
if c.accession_prot_A.find(",")!=-1:
accA=c.accession_prot_A.split(",")
if(accA[0]!=accA[1]):
linkAccessionPA_1="http://www.uniprot.org/uniprot/"+accA[0]
linkAccessionPA_2="http://www.uniprot.org/uniprot/"+accA[1]
else:
linkAccessionPA_1="http://www.uniprot.org/uniprot/"+accA[0]
accA[1]=""
linkAccessionPB_1="http://www.uniprot.org/uniprot/"+c.accession_prot_B
linkAccessionPB_2=""
accB=[c.accession_prot_B,""]
if c.accession_prot_B.find(",")!=-1:
accB=c.accession_prot_B.split(",")
if(accB[0]!=accB[1]):
linkAccessionPB_1="http://www.uniprot.org/uniprot/"+accB[0]
linkAccessionPB_2="http://www.uniprot.org/uniprot/"+accB[1]
else:
linkAccessionPB_1="http://www.uniprot.org/uniprot/"+accB[0]
accB[1]=""
# a dictionary for the results table at the web html
p={"pdb_entry":str(c.pdb_entry),"year_pub":str(c.year_pub),"resolution":str(c.resolution),
"link":str(c.link),"pdb_prot_A":str(c.pdb_prot_A),"linkPA":str(linkPA),"linkAccessionPA_1":str(linkAccessionPA_1),
"linkAccessionPA_2":str(linkAccessionPA_2),"name_prot_A":str(c.name_prot_A),"accession_prot_A_1":str(accA[0]),
"accession_prot_A_2":str(accA[1]),"chain_prot_A":str(c.chain_prot_A),"length_protein_A":str(c.length_protein_A),
"identity_prot_A":str(c.identity_prot_A),"scop_prot_A":str(c.scop_prot_A),"reso_prot_A":str(c.reso_prot_A),
"year_pub_prot_A":str(c.year_pub_prot_A),"res_num_prot_A":str(c.res_num_prot_A),"pdb_prot_B":str(c.pdb_prot_B),
"linkPB":str(linkPB),"linkAccessionPB_1":str(linkAccessionPB_1),"linkAccessionPB_2":str(linkAccessionPB_2),
"name_prot_B":str(c.name_prot_B),"accession_prot_B_1":str(accB[0]),"accession_prot_B_2":str(accB[1]),"chain_prot_B":str(c.chain_prot_B),
"length_protein_B":str(c.length_protein_B),"identity_prot_B":str(c.identity_prot_B),"scop_prot_B":str(c.scop_prot_B),
"reso_prot_B":str(c.reso_prot_B),"year_pub_prot_B":str(c.year_pub_prot_B),"res_num_prot_B":str(c.res_num_prot_B)}
protdata.append(p)
#text for download:
content = ""
#text for download:
return render_template("result.html",result = protdata,exception=exception,theQuery=theQuery,count=i)
def index():
if request.method == "GET":
return render_template("search.html")
#comments.append((request.form['complex_pdb']).strip())
complex_pdb = (request.form['complex_pdb']).strip()
com_year_from = request.form['complex_year_from']
com_year_to = request.form['complex_year_to']
name = request.form['prot_name'].strip()
is_antibody = request.form['antibody']
prot_pdb = request.form['prot_pdb'].strip()
prot_access = request.form['prot_access'].strip()
scop_family = request.form['scop']
pro_year_from = request.form['prot_year_from']
pro_year_to = request.form['prot_year_to']
len_A_from = request.form['lengthA_from']
len_A_to = request.form['lengthA_to']
len_B_from = request.form['lengthB_from']
len_B_to = request.form['lengthB_to']
res_from = request.form['res_from']
res_to = request.form['res_to']
ident_from = request.form['ident_from']
ident_to = request.form['ident_to']
flag = False
# pass the list of the results
listC, exception, theQuery = sqlalchemy_query.search_results(
request) #sending to search functions in class sqlalchemy_query
data = ""
i = 0
p = []
if (listC):
for c in listC:
i = i + 1
linkPA = "http://www.rcsb.org/pdb/explore/explore.do?structureId=" + c.pdb_prot_A[
0:4]
linkPB = "http://www.rcsb.org/pdb/explore/explore.do?structureId=" + c.pdb_prot_B[
0:4]
link = "http://www.rcsb.org/pdb/explore/explore.do?structureId=" + c.pdb_entry[
0:4]
# delete the * signs
c.pdb_prot_A = c.pdb_prot_A.replace("*", "")
c.pdb_prot_B = c.pdb_prot_B.replace("*", "")
if len(c.accession_prot_A) > 10:
accession_prot_A_1 = c.accession_prot_A.split(",")[0].replace(
",", "").replace("-", "")
accession_prot_A_2 = c.accession_prot_A.split(",")[1].replace(
",", "").replace("-", "")
link_acc_A_1 = "http://www.uniprot.org/uniprot/" + accession_prot_A_1
link_acc_A_2 = "http://www.uniprot.org/uniprot/" + accession_prot_A_2
else:
accession_prot_A_1 = c.accession_prot_A.replace(",",
"").replace(
"-", "")
link_acc_A_1 = "http://www.uniprot.org/uniprot/" + accession_prot_A_1
accession_prot_A_2 = ""
link_acc_A_2 = ""
if len(c.accession_prot_B) > 10:
accession_prot_B_1 = c.accession_prot_B.split(",")[0].replace(
",", "").replace("-", "")
accession_prot_B_2 = c.accession_prot_B.split(",")[1].replace(
",", "").replace("-", "")
link_acc_B_1 = "http://www.uniprot.org/uniprot/" + accession_prot_B_1
link_acc_B_2 = "http://www.uniprot.org/uniprot/" + accession_prot_B_2
else:
accession_prot_B_1 = c.accession_prot_B.replace(",",
"").replace(
"-", "")
accession_prot_B_2 = ""
link_acc_B_1 = "http://www.uniprot.org/uniprot/" + accession_prot_B_1
link_acc_B_2 = ""
# c.accession_prot_A=c.accession_prot_A.replace("-","")
# c.accession_prot_B=c.accession_prot_B.replace("-","")
# linkAccessionPA_1="http://www.uniprot.org/uniprot/"+c.accession_prot_A
# linkAccessionPA_2=""
# accA=[c.accession_prot_A,""]
# if c.accession_prot_A.find(",")!=-1:
# accA=c.accession_prot_A.split(",")
# if(accA[0]!=accA[1]):
# linkAccessionPA_1="http://www.uniprot.org/uniprot/"+accA[0]
# linkAccessionPA_2="http://www.uniprot.org/uniprot/"+accA[1]
# else:
# linkAccessionPA_1="http://www.uniprot.org/uniprot/"+accA[0]
# accA[1]=""
# linkAccessionPB_1="http://www.uniprot.org/uniprot/"+c.accession_prot_B
# linkAccessionPB_2=""
# accB=[c.accession_prot_B,""]
# if c.accession_prot_B.find(",")!=-1:
# accB=c.accession_prot_B.split(",")
# if(accB[0]!=accB[1]):
# linkAccessionPB_1="http://www.uniprot.org/uniprot/"+accB[0]
# linkAccessionPB_2="http://www.uniprot.org/uniprot/"+accB[1]
# else:
# linkAccessionPB_1="http://www.uniprot.org/uniprot/"+accB[0]
# accB[1]=""
# # a dictionary for the results table at the web html
# p={"pdb_entry":str(c.pdb_entry),"year_pub":str(c.year_pub),"resolution":str(c.resolution),
# "link":str(c.link),"pdb_prot_A":str(c.pdb_prot_A),"linkPA":str(linkPA),"linkAccessionPA_1":str(linkAccessionPA_1),
# "linkAccessionPA_2":str(linkAccessionPA_2),"name_prot_A":str(c.name_prot_A),"accession_prot_A_1":str(accA[0]),
# "accession_prot_A_2":str(accA[1]),"chain_prot_A":str(c.chain_prot_A),"length_protein_A":str(c.length_protein_A),
# "identity_prot_A":str(c.identity_prot_A),"scop_prot_A":str(c.scop_prot_A),"reso_prot_A":str(c.reso_prot_A),
# "year_pub_prot_A":str(c.year_pub_prot_A),"res_num_prot_A":str(c.res_num_prot_A),"pdb_prot_B":str(c.pdb_prot_B),
# "linkPB":str(linkPB),"linkAccessionPB_1":"fff","linkAccessionPB_2":str(linkAccessionPB_2),
# "name_prot_B":str(c.name_prot_B),"accession_prot_B_1":str(accB[0]),"accession_prot_B_2":str(accB[1]),"chain_prot_B":str(c.chain_prot_B),
# "length_protein_B":str(c.length_protein_B),"identity_prot_B":str(c.identity_prot_B),"scop_prot_B":str(c.scop_prot_B),
# "reso_prot_B":str(c.reso_prot_B),"year_pub_prot_B":str(c.year_pub_prot_B),"res_num_prot_B":str(c.res_num_prot_B)}
# protdata.append(p)
#text for download:
content = ""
t = {
"pdb_entry": str(c.pdb_entry),
"link": link,
"year_pub": str(c.year_pub),
"resolution": str(c.resolution),
"pdb_prot_A": str(c.pdb_prot_A),
"linkPA": str(linkPA),
"linkAccessionPA_1": link_acc_A_1,
"linkAccessionPA_2": link_acc_A_2,
"name_prot_A": str(c.name_prot_A),
"accession_prot_A_1": accession_prot_A_1,
"accession_prot_A_2": accession_prot_A_2,
"chain_prot_A": str(c.chain_prot_A),
"length_protein_A": str(c.length_protein_A),
"identity_prot_A": str(c.identity_prot_A),
"scop_prot_A": str(c.scop_prot_A),
"reso_prot_A": str(c.reso_prot_A),
"year_pub_prot_A": str(c.year_pub_prot_A),
"res_num_prot_A": str(c.res_num_prot_A),
"pdb_prot_B": str(c.pdb_prot_B),
"linkPB": str(linkPB),
"linkAccessionPB_1": link_acc_B_1,
"linkAccessionPB_2": link_acc_B_2,
"name_prot_B": str(c.name_prot_B),
"accession_prot_B_1": accession_prot_B_1,
"accession_prot_B_2": accession_prot_B_2,
"chain_prot_B": str(c.chain_prot_B),
"length_protein_B": str(c.length_protein_B),
"identity_prot_B": str(c.identity_prot_B),
"scop_prot_B": str(c.scop_prot_B),
"reso_prot_B": str(c.reso_prot_B),
"year_pub_prot_B": str(c.year_pub_prot_B),
"res_num_prot_B": str(c.res_num_prot_B)
}
#result=[]
#for i in listC:
# result.append(i.pdb_entry)
p.append(t)
index.save_results = list(p)
return render_template("result3.html",
result=p,
exception="",
theQuery=theQuery,
count=len(p))
def result():
if request.method == 'POST' :
theQuery=""
protdata=[]
listC=[]
exception=""
com_year_from=request.form['complex_year_from']
com_year_to=request.form['complex_year_to']
pro_year_from=request.form['prot_year_from']
pro_year_to=request.form['prot_year_to']
len_A_from=request.form['lengthA_from']
len_A_to=request.form['lengthA_to']
len_B_from=request.form['lengthB_from']
len_B_to=request.form['lengthB_to']
interface_from=request.form['interface_from']
interface_to=request.form['interface_to']
res_from=request.form['res_from']
res_to=request.form['res_to']
flag=False
#technical varification
if(com_year_from!=""):
if(not com_year_from.isdigit()):
flash("Invalid complex pub. year from value")
flag=True
if(com_year_to!=""):
if(not com_year_to.isdigit()):
flash("Invalid complex pub. year to value")
flag=True
if(pro_year_from!=""):
if(not pro_year_from.isdigit()):
flash("Invalid protein pub. year from value")
flag=True
if(pro_year_to!=""):
if(not pro_year_to.isdigit()):
flash("Invalid protein pub. year to value")
flag=True
if(len_A_from!=""):
if(not len_A_from.isdigit()):
flash("Invalid protein A from value")
flag=True
if(len_A_to!=""):
if(not len_A_to.isdigit()):
flash("Invalid protein A to value")
flag=True
if(len_B_from!=""):
if(not len_B_from.isdigit()):
flash("Invalid protein B from value")
flag=True
if(len_B_to!=""):
if(not len_B_to.isdigit()):
flash("Invalid protein B to value")
flag=True
if(interface_from!=""):
if(not interface_from.isdigit()):
flash("Invalid interface from value")
flag=True
if(interface_to!=""):
if(not interface_to.isdigit()):
flash("Invalid interface to value")
flag=True
if(res_from!=""):
if(not res_from.replace('.','',1).isdigit()):
flash("Invalid resolution from value")
flag=True
if(res_to!=""):
if(not res_to.replace('.','',1).isdigit()):
flash("Invalid resolution to value")
flag=True
if(flag==True):
return redirect(url_for('search'))
# pass the list of the results
listC,exception,theQuery=sqlalchemy_query.search_results(request) #sending to search function in class sqlalchemy_query
data=""
i=0
if(listC):
os.chdir('C:\\Users\\shirit\\Desktop\\FlaskApp\\static')
os.remove("searched_complexes.txt") # delete the exist download
f = open("searched_complexes.txt","w") # open new file to download
for c in listC:
i=i+1
linkPA="http://www.rcsb.org/pdb/explore/explore.do?structureId="+c.pdb_prot_A
linkPB="http://www.rcsb.org/pdb/explore/explore.do?structureId="+c.pdb_prot_B
p={"pdb_entry":str(c.pdb_entry),
"year_pub":str(c.year_pub),"interface_area":str(c.interface_area),
"interface_area_seq":str(c.interface_area_seq),"resolution":str(c.resolution),
"link":str(c.link),"pdb_prot_A":str(c.pdb_prot_A),"linkPA":str(linkPA),"name_prot_A":str(c.name_prot_A),
"chain_prot_A":str(c.chain_prot_A),"length_protein_A":str(c.length_protein_A),
"scop_prot_A":str(c.scop_prot_A),"reso_prot_A":str(c.reso_prot_A),
"year_pub_prot_A":str(c.year_pub_prot_A),"seq_prot_A":str(c.seq_prot_A),
"res_num_prot_A":str(c.res_num_prot_A),"pdb_prot_B":str(c.pdb_prot_B),"linkPB":str(linkPB),
"name_prot_B":str(c.name_prot_B),"chain_prot_B":str(c.chain_prot_B),
"length_protein_B":str(c.length_protein_B),"scop_prot_B":str(c.scop_prot_B),
"reso_prot_B":str(c.reso_prot_B),"year_pub_prot_B":str(c.year_pub_prot_B),
"seq_prot_B":str(c.seq_prot_B),"res_num_prot_B":str(c.res_num_prot_B)}
protdata.append(p)
#for download:
content = ""
# content=content+theQuery
content=content+"complex "+str(i)+"\n"
content=content+"Complex: "
content=content+"PDB- "+str(c.pdb_entry) +"; "
content=content+"chains- "+str(c.chains) +"; "
content=content+"publish year- "+str(c.year_pub)+"; "
content=content+"resolution- "+str(c.resolution)+"; "
content=content+"interface area size- "+str(c.interface_area)+";\n"
content=content+"interface area sequence- "+str(c.interface_area_seq)+"\n"
content=content+"Protein A: "
content=content+"PDB- "+str(c.pdb_prot_A)+"; "
content=content+"name- "+str(c.name_prot_A)+"; "
content=content+"chain- "+str(c.chain_prot_A)+"; "
content=content+"length- "+str(c.length_protein_A)+"; "
content=content+"scop family- "+str(c.scop_prot_A)+"; "
content=content+"scop super family- "+str(c.super_fam_A)+"; "
content=content+"resolution- "+str(c.reso_prot_A)+"; "
content=content+"publish year- "+str(c.year_pub_prot_A)+"; "
content=content+"accession- "+str(c.accession_prot_A)+"; "
content=content+"identity- "+str(c.identity_prot_A)+"; "
content=content+"res. num- "+str(c.res_num_prot_A)+";\n"
content=content+"seq- "+str(c.seq_prot_A)+"\n"
content=content+"Protein B: "
content=content+"PDB- "+str(c.pdb_prot_B)+"; "
content=content+"name- "+str(c.name_prot_B)+"; "
content=content+"chain- "+str(c.chain_prot_B)+"; "
content=content+"length- "+str(c.length_protein_B)+"; "
content=content+"scop family- "+str(c.scop_prot_B)+"; "
content=content+"scop super family- "+str(c.super_fam_B)+"; "
content=content+"resolution- "+str(c.reso_prot_B)+"; "
content=content+"publish year- "+str(c.year_pub_prot_B)+"; "
content=content+"accession- "+str(c.accession_prot_B)+"; "
content=content+"identity- "+str(c.identity_prot_B)+"; "
content=content+"res. num- "+str(c.res_num_prot_B)+";\n"
content=content+"seq- "+str(c.seq_prot_B)+"\n"
content=content+"\n\n"
data=data+content
f.write(data)
f.close()
os.chdir('C:\\Users\\shirit\\Desktop\\FlaskApp')
return render_template("result.html",result = protdata,exception=exception,theQuery=theQuery,count=i)
def result():
if request.method == 'POST': #post the complex results to the web page
theQuery = ""
protdata = []
listC = []
exception = ""
complex_pdb = (request.form['complex_pdb']).strip()
com_year_from = request.form['complex_year_from']
com_year_to = request.form['complex_year_to']
name = request.form['prot_name'].strip()
is_antibody = request.form['antibody']
prot_pdb = request.form['prot_pdb'].strip()
prot_access = request.form['prot_access'].strip()
scop_family = request.form['scop']
pro_year_from = request.form['prot_year_from']
pro_year_to = request.form['prot_year_to']
len_A_from = request.form['lengthA_from']
len_A_to = request.form['lengthA_to']
len_B_from = request.form['lengthB_from']
len_B_to = request.form['lengthB_to']
res_from = request.form['res_from']
res_to = request.form['res_to']
ident_from = request.form['ident_from']
ident_to = request.form['ident_to']
flag = False
if (com_year_from == "" and com_year_to == "" and ident_from == ""
and ident_to == "" and is_antibody == "no"
and complex_pdb == "" and prot_pdb == "" and prot_access == ""
and name == "" and scop_family == "" and pro_year_from == ""
and pro_year_to == "" and len_A_from == "" and len_A_to == ""
and len_B_from == "" and len_B_to == "" and res_from == ""
and res_to == ""):
flash("please insert search fields")
flag = True
#technical varification
if (com_year_from != ""):
if (not com_year_from.isdigit()):
flash("Invalid complex pub. year from value")
flag = True
if (com_year_to != ""):
if (not com_year_to.isdigit()):
flash("Invalid complex pub. year to value")
flag = True
if (pro_year_from != ""):
if (not pro_year_from.isdigit()):
flash("Invalid protein pub. year from value")
flag = True
if (pro_year_to != ""):
if (not pro_year_to.isdigit()):
flash("Invalid protein pub. year to value")
flag = True
if (len_A_from != ""):
if (not len_A_from.isdigit()):
flash("Invalid protein A from value")
flag = True
if (len_A_to != ""):
if (not len_A_to.isdigit()):
flash("Invalid protein A to value")
flag = True
if (len_B_from != ""):
if (not len_B_from.isdigit()):
flash("Invalid protein B from value")
flag = True
if (len_B_to != ""):
if (not len_B_to.isdigit()):
flash("Invalid protein B to value")
flag = True
if (res_from != ""):
if (not res_from.replace('.', '', 1).isdigit()):
flash("Invalid resolution from value")
flag = True
if (res_to != ""):
if (not res_to.replace('.', '', 1).isdigit()):
flash("Invalid resolution to value")
flag = True
if (ident_from != ""):
if (not ident_from.isdigit()):
flash("Invalid identity from value")
flag = True
if (ident_to != ""):
if (not ident_to.isdigit()):
flash("Invalid identity to value")
flag = True
if (flag == True): # if there was an error in the search
return redirect(url_for('search'))
# pass the list of the results
listC, exception, theQuery = sqlalchemy_query.search_results(
request) #sending to search functions in class sqlalchemy_query
data = ""
i = 0
if (listC):
path_ = os.getcwd()
os.chdir(path_ + "\static") # to save the download file
os.remove("complexes.txt") # delete the exist download file
f = open("complexes.txt", "w") # open new file to download
for c in listC:
i = i + 1
linkPA = "http://www.rcsb.org/pdb/explore/explore.do?structureId=" + c.pdb_prot_A[
0:4]
linkPB = "http://www.rcsb.org/pdb/explore/explore.do?structureId=" + c.pdb_prot_B[
0:4]
c.accession_prot_A = c.accession_prot_A.replace("-", "")
c.accession_prot_B = c.accession_prot_B.replace("-", "")
linkAccessionPA_1 = "http://www.uniprot.org/uniprot/" + c.accession_prot_A
linkAccessionPA_2 = ""
accA = [c.accession_prot_A, ""]
if c.accession_prot_A.find(",") != -1:
accA = c.accession_prot_A.split(",")
if (accA[0] != accA[1]):
linkAccessionPA_1 = "http://www.uniprot.org/uniprot/" + accA[
0]
linkAccessionPA_2 = "http://www.uniprot.org/uniprot/" + accA[
1]
else:
linkAccessionPA_1 = "http://www.uniprot.org/uniprot/" + accA[
0]
accA[1] = ""
linkAccessionPB_1 = "http://www.uniprot.org/uniprot/" + c.accession_prot_B
linkAccessionPB_2 = ""
accB = [c.accession_prot_B, ""]
if c.accession_prot_B.find(",") != -1:
accB = c.accession_prot_B.split(",")
if (accB[0] != accB[1]):
linkAccessionPB_1 = "http://www.uniprot.org/uniprot/" + accB[
0]
linkAccessionPB_2 = "http://www.uniprot.org/uniprot/" + accB[
1]
else:
linkAccessionPB_1 = "http://www.uniprot.org/uniprot/" + accB[
0]
accB[1] = ""
# a dictionary for the results table at the web html
p = {
"pdb_entry": str(c.pdb_entry),
"year_pub": str(c.year_pub),
"resolution": str(c.resolution),
"link": str(c.link),
"pdb_prot_A": str(c.pdb_prot_A),
"linkPA": str(linkPA),
"linkAccessionPA_1": str(linkAccessionPA_1),
"linkAccessionPA_2": str(linkAccessionPA_2),
"name_prot_A": str(c.name_prot_A),
"accession_prot_A_1": str(accA[0]),
"accession_prot_A_2": str(accA[1]),
"chain_prot_A": str(c.chain_prot_A),
"length_protein_A": str(c.length_protein_A),
"identity_prot_A": str(c.identity_prot_A),
"scop_prot_A": str(c.scop_prot_A),
"reso_prot_A": str(c.reso_prot_A),
"year_pub_prot_A": str(c.year_pub_prot_A),
"res_num_prot_A": str(c.res_num_prot_A),
"pdb_prot_B": str(c.pdb_prot_B),
"linkPB": str(linkPB),
"linkAccessionPB_1": str(linkAccessionPB_1),
"linkAccessionPB_2": str(linkAccessionPB_2),
"name_prot_B": str(c.name_prot_B),
"accession_prot_B_1": str(accB[0]),
"accession_prot_B_2": str(accB[1]),
"chain_prot_B": str(c.chain_prot_B),
"length_protein_B": str(c.length_protein_B),
"identity_prot_B": str(c.identity_prot_B),
"scop_prot_B": str(c.scop_prot_B),
"reso_prot_B": str(c.reso_prot_B),
"year_pub_prot_B": str(c.year_pub_prot_B),
"res_num_prot_B": str(c.res_num_prot_B)
}
protdata.append(p)
#text for download:
content = ""
content = content + "complex " + str(i) + "\n"
content = content + "Complex: "
content = content + "PDB- " + str(c.pdb_entry) + "; "
content = content + "is antibody- " + str(c.isAntiBody) + "; "
content = content + "chains- " + str(c.chains) + "; "
content = content + "publish year- " + str(c.year_pub) + "; "
content = content + "resolution- " + str(c.resolution) + "; "
content = content + "Protein A: "
content = content + "PDB- " + str(c.pdb_prot_A) + "; "
content = content + "name- " + str(c.name_prot_A) + "; "
content = content + "chain- " + str(c.chain_prot_A) + "; "
content = content + "length- " + str(c.length_protein_A) + "; "
content = content + "scop family- " + str(c.scop_prot_A) + "; "
content = content + "scop super family- " + str(
c.super_fam_A) + "; "
content = content + "resolution- " + str(c.reso_prot_A) + "; "
content = content + "publish year- " + str(
c.year_pub_prot_A) + "; "
content = content + "accession- " + str(
c.accession_prot_A) + "; "
content = content + "identity- " + str(
c.identity_prot_A) + "; "
content = content + "seq- " + str(c.seq_prot_A) + "\n"
content = content + "Protein B: "
content = content + "PDB- " + str(c.pdb_prot_B) + "; "
content = content + "name- " + str(c.name_prot_B) + "; "
content = content + "chain- " + str(c.chain_prot_B) + "; "
content = content + "length- " + str(c.length_protein_B) + "; "
content = content + "scop family- " + str(c.scop_prot_B) + "; "
content = content + "scop super family- " + str(
c.super_fam_B) + "; "
content = content + "resolution- " + str(c.reso_prot_B) + "; "
content = content + "publish year- " + str(
c.year_pub_prot_B) + "; "
content = content + "accession- " + str(
c.accession_prot_B) + "; "
content = content + "identity- " + str(
c.identity_prot_B) + "; "
content = content + "seq- " + str(c.seq_prot_B) + "\n"
content = content + "\n\n"
data = data + content
f.write(data)
f.close()
os.chdir(path_)
return render_template("result.html",
result=protdata,
exception=exception,
theQuery=theQuery,
count=i)