コード例 #1
0
def train_unet(args):
    """
    Wrapper for reconstruction (U-Net) model training.

    :param args: Arguments object, containing training hyperparameters.
    """
    args.exp_dir.mkdir(parents=True, exist_ok=True)
    writer = SummaryWriter(log_dir=args.exp_dir / 'summary')

    if args.resume:
        recon_model, args, start_epoch, optimizer = load_recon_model(
            args.recon_model_checkpoint, optim=True)
    else:
        model = build_reconstruction_model(args)
        if args.data_parallel:
            model = torch.nn.DataParallel(model)
        optimizer = build_optim(args, model.parameters())
        best_dev_loss = 1e9
        start_epoch = 0
    logging.info(args)
    logging.info(model)

    # Save arguments for bookkeeping
    args_dict = {
        key: str(value)
        for key, value in args.__dict__.items()
        if not key.startswith('__') and not callable(key)
    }
    save_json(args.exp_dir / 'args.json', args_dict)

    train_loader = create_data_loader(args, 'train', shuffle=True)
    dev_loader = create_data_loader(args, 'val')
    display_loader = create_data_loader(args, 'val', display=True)
    scheduler = torch.optim.lr_scheduler.StepLR(optimizer, args.lr_step_size,
                                                args.lr_gamma)

    for epoch in range(start_epoch, args.num_epochs):
        train_loss, train_time = train_epoch(args, epoch, model, train_loader,
                                             optimizer, writer)
        dev_loss, dev_l1loss, dev_time = evaluate_loss(args, epoch, model,
                                                       dev_loader, writer)
        visualize(args, epoch, model, display_loader, writer)
        scheduler.step()

        is_new_best = dev_loss < best_dev_loss
        best_dev_loss = min(best_dev_loss, dev_loss)
        save_model(args, args.exp_dir, epoch, model, optimizer, best_dev_loss,
                   is_new_best)
        logging.info(
            f'Epoch = [{epoch:4d}/{args.num_epochs:4d}] TrainL1Loss = {train_loss:.4g} DevL1Loss = {dev_l1loss:.4g} '
            f'DevLoss = {dev_loss:.4g} TrainTime = {train_time:.4f}s DevTime = {dev_time:.4f}s',
        )
    writer.close()
コード例 #2
0
ファイル: policy_model_utils.py プロジェクト: zihuiwu/pg_mri
def load_policy_model(checkpoint_file, optim=False):
    checkpoint = torch.load(checkpoint_file)
    args = checkpoint['args']
    model = build_policy_model(args)

    if not optim:
        # No gradients for this model
        for param in model.parameters():
            param.requires_grad = False

    if args.data_parallel:
        model = torch.nn.DataParallel(model)
    model.load_state_dict(checkpoint['model'])

    start_epoch = checkpoint['epoch']

    if optim:
        optimizer = build_optim(args, model.parameters())
        optimizer.load_state_dict(checkpoint['optimizer'])
        del checkpoint
        return model, args, start_epoch, optimizer

    del checkpoint
    return model, args
コード例 #3
0
def load_recon_model(args, optim=False):
    checkpoint = torch.load(args.recon_model_checkpoint)
    recon_args = checkpoint['args']
    recon_model = build_reconstruction_model(recon_args)

    if not optim:
        # No gradients for this model
        for param in recon_model.parameters():
            param.requires_grad = False

    if recon_args.data_parallel:  # if model was saved with data_parallel
        recon_model = torch.nn.DataParallel(recon_model)
    recon_model.load_state_dict(checkpoint['model'])

    start_epoch = checkpoint['epoch']

    if optim:
        optimizer = build_optim(args, recon_model.parameters())
        optimizer.load_state_dict(checkpoint['optimizer'])
        del checkpoint
        return recon_model, recon_args, start_epoch, optimizer

    del checkpoint
    return recon_args, recon_model
コード例 #4
0
def train_and_eval(args, recon_args, recon_model):
    if args.resume:
        # Check that this works
        resumed = True
        new_run_dir = args.policy_model_checkpoint.parent
        data_path = args.data_path
        # In case models have been moved to a different machine, make sure the path to the recon model is the
        # path provided.
        recon_model_checkpoint = args.recon_model_checkpoint

        model, args, start_epoch, optimiser = load_policy_model(pathlib.Path(
            args.policy_model_checkpoint),
                                                                optim=True)

        args.old_run_dir = args.run_dir
        args.old_recon_model_checkpoint = args.recon_model_checkpoint
        args.old_data_path = args.data_path

        args.recon_model_checkpoint = recon_model_checkpoint
        args.run_dir = new_run_dir
        args.data_path = data_path
        args.resume = True
    else:
        resumed = False
        # Improvement model to train
        model = build_policy_model(args)
        # Add mask parameters for training
        args = add_mask_params(args)
        if args.data_parallel:
            model = torch.nn.DataParallel(model)
        optimiser = build_optim(args, model.parameters())
        start_epoch = 0
        # Create directory to store results in
        savestr = '{}_res{}_al{}_accel{}_k{}_{}_{}'.format(
            args.dataset, args.resolution, args.acquisition_steps,
            args.accelerations, args.num_trajectories,
            datetime.datetime.now().strftime("%Y-%m-%d_%H:%M:%S"),
            ''.join(choice(ascii_uppercase) for _ in range(5)))
        args.run_dir = args.exp_dir / savestr
        args.run_dir.mkdir(parents=True, exist_ok=False)

    args.resumed = resumed

    if args.wandb:
        allow_val_change = args.resumed  # only allow changes if resumed: otherwise something is wrong.
        wandb.config.update(args, allow_val_change=allow_val_change)
        wandb.watch(model, log='all')

    # Logging
    logging.info(recon_model)
    logging.info(model)
    # Save arguments for bookkeeping
    args_dict = {
        key: str(value)
        for key, value in args.__dict__.items()
        if not key.startswith('__') and not callable(key)
    }
    save_json(args.run_dir / 'args.json', args_dict)

    # Initialise summary writer
    writer = SummaryWriter(log_dir=args.run_dir / 'summary')

    # Parameter counting
    logging.info(
        'Reconstruction model parameters: total {}, of which {} trainable and {} untrainable'
        .format(count_parameters(recon_model),
                count_trainable_parameters(recon_model),
                count_untrainable_parameters(recon_model)))
    logging.info(
        'Policy model parameters: total {}, of which {} trainable and {} untrainable'
        .format(count_parameters(model), count_trainable_parameters(model),
                count_untrainable_parameters(model)))

    if args.scheduler_type == 'step':
        scheduler = torch.optim.lr_scheduler.StepLR(optimiser,
                                                    args.lr_step_size,
                                                    args.lr_gamma)
    elif args.scheduler_type == 'multistep':
        if not isinstance(args.lr_multi_step_size, list):
            args.lr_multi_step_size = [args.lr_multi_step_size]
        scheduler = torch.optim.lr_scheduler.MultiStepLR(
            optimiser, args.lr_multi_step_size, args.lr_gamma)
    else:
        raise ValueError(
            "{} is not a valid scheduler choice ('step', 'multistep')".format(
                args.scheduler_type))

    # Create data loaders
    train_loader = create_data_loader(args, 'train', shuffle=True)
    dev_loader = create_data_loader(args, 'val', shuffle=False)

    train_data_range_dict = create_data_range_dict(args, train_loader)
    dev_data_range_dict = create_data_range_dict(args, dev_loader)

    if not args.resume:
        if args.do_train_ssim:
            do_and_log_evaluation(args, -1, recon_model, model, train_loader,
                                  writer, 'Train', train_data_range_dict)
        do_and_log_evaluation(args, -1, recon_model, model, dev_loader, writer,
                              'Val', dev_data_range_dict)

    for epoch in range(start_epoch, args.num_epochs):
        train_loss, train_time = train_epoch(args, epoch, recon_model, model,
                                             train_loader, optimiser, writer,
                                             train_data_range_dict)
        logging.info(
            f'Epoch = [{epoch+1:3d}/{args.num_epochs:3d}] TrainLoss = {train_loss:.3g} TrainTime = {train_time:.2f}s '
        )

        if args.do_train_ssim:
            do_and_log_evaluation(args, epoch, recon_model, model,
                                  train_loader, writer, 'Train',
                                  train_data_range_dict)
        do_and_log_evaluation(args, epoch, recon_model, model, dev_loader,
                              writer, 'Val', dev_data_range_dict)

        scheduler.step()
        save_policy_model(args, args.run_dir, epoch, model, optimiser)
    writer.close()