def precision_recall_curve(df,
save_path,
style,
sem=None,
title='Precision-Recall Curve',
xlabel='Recall',
ylabel='Precision'):
logger.info('Plotting precision-recall curve (%s) ...' % save_path)
if not sem:
# normal line plot
myplt.line(df,
save_path,
style=style,
title=title,
xlabel=xlabel,
ylabel=ylabel)
else:
# include standard error of the mean (sem) in the plot
myplt.line_fill_between(df,
sem,
save_path,
style=style,
title=title,
xlabel=xlabel,
ylabel=ylabel)
logger.info('Finished plotting PR curve.')
def receiver_operator_curve(df,
save_path,
style,
sem=None,
title='ROC Curve',
xlabel='False-Positive Rate',
ylabel='True-Positive Rate'):
logger.info('Plotting receiver operator curve (%s) ...' % save_path)
if not sem:
# normal line plot
myplt.line(df,
save_path,
style=style,
title='ROC Curve',
xlabel='False-Positive Rate',
ylabel='True-Positive Rate')
else:
# include standard error of the mean (sem) in plot
myplt.line_fill_between(df,
sem,
save_path,
title=title,
xlabel=xlabel,
ylabel=ylabel)
logger.info('Finished plotting ROC curve.')
def receiver_operator_curve(df,
save_path,
style,
sem=None,
title='ROC Curve',
xlabel='False-Positive Rate',
ylabel='True-Positive Rate'):
logger.info('Plotting receiver operator curve (%s) ...' % save_path)
if not sem:
# normal line plot
myplt.line(df, save_path,
style=style,
title='ROC Curve',
xlabel='False-Positive Rate',
ylabel='True-Positive Rate')
else:
# include standard error of the mean (sem) in plot
myplt.line_fill_between(df, sem, save_path,
title=title,
xlabel=xlabel,
ylabel=ylabel)
logger.info('Finished plotting ROC curve.')
def precision_recall_curve(df,
save_path,
style,
sem=None,
title='Precision-Recall Curve',
xlabel='Recall',
ylabel='Precision'):
logger.info('Plotting precision-recall curve (%s) ...' % save_path)
if not sem:
# normal line plot
myplt.line(df, save_path,
style=style,
title=title,
xlabel=xlabel,
ylabel=ylabel)
else:
# include standard error of the mean (sem) in the plot
myplt.line_fill_between(df, sem, save_path,
style=style,
title=title,
xlabel=xlabel,
ylabel=ylabel)
logger.info('Finished plotting PR curve.')
def tsg_mutations_parameter(df, save_path, title='', xlabel='', ylabel=''):
logger.info('Plotting tsg mutations while varying tsg score')
myplt.line(df, save_path, title=title, ylabel=ylabel, xlabel=xlabel)
logger.info('Finished plotting.')
def onco_mutations_parameter(df, save_path, title='', xlabel='', ylabel=''):
logger.info('Plotting oncogene mutations while varying recurrent '
'parameter')
# df.index.name = 'Oncogene Score'
myplt.line(df, save_path, title=title, ylabel=ylabel, xlabel=xlabel)
logger.info('Finished plotting.')