def precision_recall_curve(df, save_path, style, sem=None, title='Precision-Recall Curve', xlabel='Recall', ylabel='Precision'): logger.info('Plotting precision-recall curve (%s) ...' % save_path) if not sem: # normal line plot myplt.line(df, save_path, style=style, title=title, xlabel=xlabel, ylabel=ylabel) else: # include standard error of the mean (sem) in the plot myplt.line_fill_between(df, sem, save_path, style=style, title=title, xlabel=xlabel, ylabel=ylabel) logger.info('Finished plotting PR curve.')
def receiver_operator_curve(df, save_path, style, sem=None, title='ROC Curve', xlabel='False-Positive Rate', ylabel='True-Positive Rate'): logger.info('Plotting receiver operator curve (%s) ...' % save_path) if not sem: # normal line plot myplt.line(df, save_path, style=style, title='ROC Curve', xlabel='False-Positive Rate', ylabel='True-Positive Rate') else: # include standard error of the mean (sem) in plot myplt.line_fill_between(df, sem, save_path, title=title, xlabel=xlabel, ylabel=ylabel) logger.info('Finished plotting ROC curve.')
def receiver_operator_curve(df, save_path, style, sem=None, title='ROC Curve', xlabel='False-Positive Rate', ylabel='True-Positive Rate'): logger.info('Plotting receiver operator curve (%s) ...' % save_path) if not sem: # normal line plot myplt.line(df, save_path, style=style, title='ROC Curve', xlabel='False-Positive Rate', ylabel='True-Positive Rate') else: # include standard error of the mean (sem) in plot myplt.line_fill_between(df, sem, save_path, title=title, xlabel=xlabel, ylabel=ylabel) logger.info('Finished plotting ROC curve.')
def precision_recall_curve(df, save_path, style, sem=None, title='Precision-Recall Curve', xlabel='Recall', ylabel='Precision'): logger.info('Plotting precision-recall curve (%s) ...' % save_path) if not sem: # normal line plot myplt.line(df, save_path, style=style, title=title, xlabel=xlabel, ylabel=ylabel) else: # include standard error of the mean (sem) in the plot myplt.line_fill_between(df, sem, save_path, style=style, title=title, xlabel=xlabel, ylabel=ylabel) logger.info('Finished plotting PR curve.')
def tsg_mutations_parameter(df, save_path, title='', xlabel='', ylabel=''): logger.info('Plotting tsg mutations while varying tsg score') myplt.line(df, save_path, title=title, ylabel=ylabel, xlabel=xlabel) logger.info('Finished plotting.')
def onco_mutations_parameter(df, save_path, title='', xlabel='', ylabel=''): logger.info('Plotting oncogene mutations while varying recurrent ' 'parameter') # df.index.name = 'Oncogene Score' myplt.line(df, save_path, title=title, ylabel=ylabel, xlabel=xlabel) logger.info('Finished plotting.')