def writeListOfSubElements(attrib, output, element):
loname = generalFunctions.writeListOf(strFunctions.cap(attrib['name']))
output.write('LIBSEDML_EXTERN\n')
output.write('int\n')
output.write('{0}_add{1}({0}_t * {2}, '.format(
element, strFunctions.cap(attrib['name']),
strFunctions.objAbbrev(element)))
output.write('{0}_t * {1});\n\n\n'.format(
attrib['element'], strFunctions.objAbbrev(attrib['element'])))
if attrib.has_key('abstract') == False or (attrib.has_key('abstract') and
attrib['abstract'] == False):
output.write('LIBSEDML_EXTERN\n')
output.write('{0}_t *\n'.format(attrib['element']))
output.write('{0}_create{1}({0}_t * {2}'.format(
element, strFunctions.cap(attrib['name']),
strFunctions.objAbbrev(element)))
output.write(');\n\n\n')
elif attrib.has_key('concrete'):
for elem in attrib['concrete']:
output.write('LIBSEDML_EXTERN\n')
output.write('{0}_t *\n'.format(elem['element']))
output.write('{0}_create{1}({0}_t * {2}'.format(
element, strFunctions.cap(elem['name']),
strFunctions.objAbbrev(element)))
output.write(');\n\n\n')
output.write('LIBSEDML_EXTERN\n')
output.write('SedListOf_t *\n')
output.write('{0}_get{1}({0}_t * {2})'.format(
element, loname, strFunctions.objAbbrev(element)))
output.write(';\n\n\n')
output.write('LIBSEDML_EXTERN\n')
output.write('{0}_t *\n'.format(attrib['element']))
output.write('{0}_get{1}({0}_t * {2}, '.format(
element, strFunctions.cap(attrib['name']),
strFunctions.objAbbrev(element)))
output.write('unsigned int n);\n\n\n')
output.write('LIBSEDML_EXTERN\n')
output.write('{0}_t *\n'.format(attrib['element']))
output.write('{0}_get{1}ById({0}_t * {2}, '.format(
element, strFunctions.cap(attrib['name']),
strFunctions.objAbbrev(element)))
output.write('const char * sid);\n\n\n')
output.write('LIBSEDML_EXTERN\n')
output.write('unsigned int\n')
output.write('{0}_getNum{1}s({0}_t * {2}'.format(
element, strFunctions.cap(attrib['name']),
strFunctions.objAbbrev(element)))
output.write(');\n\n\n')
output.write('LIBSEDML_EXTERN\n')
output.write('{0}_t *\n'.format(attrib['element']))
output.write('{0}_remove{1}({0}_t * {2}, '.format(
element, strFunctions.cap(attrib['name']),
strFunctions.objAbbrev(element)))
output.write('unsigned int n);\n\n\n')
output.write('LIBSEDML_EXTERN\n')
output.write('{0}_t *\n'.format(attrib['element']))
output.write('{0}_remove{1}ById({0}_t * {2}, '.format(
element, strFunctions.cap(attrib['name']),
strFunctions.objAbbrev(element)))
output.write('const char * sid);\n\n\n')
def writeGetFunction(attrib, output, element):
att = generalFunctions.parseAttributeForC(attrib)
attName = att[0]
capAttName = att[1]
attType = att[2]
if att[3] == 'const char *':
attTypeCode = 'char *'
else:
attTypeCode = att[3]
num = att[4]
if attrib['type'] != 'element' and attrib['type'] != 'lo_element':
output.write('LIBSEDML_EXTERN\n')
output.write('{0}\n'.format(attTypeCode))
output.write('{0}_get{1}'.format(element, capAttName))
output.write('({0}_t * {1});\n\n\n'.format(element, strFunctions.objAbbrev(element)))
elif attrib['type'] == 'element':
if attrib['name'] == 'Math' or attrib['name'] == 'math':
output.write('LIBSEDML_EXTERN\n')
output.write('ASTNode_t*\n')
output.write('{0}_getMath'.format(element))
output.write('({0}_t * {1});\n\n\n'.format(element, strFunctions.objAbbrev(element)))
else:
output.write('LIBSEDML_EXTERN\n')
output.write('{0}_t*\n'.format(strFunctions.cap(attrib['element'])))
output.write('{0}_get{1}'.format(element, capAttName))
output.write('({0}_t * {1});\n\n\n'.format(element, strFunctions.objAbbrev(element)))
output.write('LIBSEDML_EXTERN\n')
output.write('{0}_t*\n'.format(strFunctions.cap(attrib['element'])))
output.write('{0}_create{1}'.format(element, capAttName))
output.write('({0}_t * {1});\n\n\n'.format(element, strFunctions.objAbbrev(element)))
def writeUnsetFunction(attrib, output, element):
att = generalFunctions.parseAttributeForC(attrib)
attName = att[0]
capAttName = att[1]
attType = att[2]
attTypeCode = att[3]
num = att[4]
if attrib["type"] == "element" or attrib["type"] == "lo_element" or attrib["type"] == "inline_lo_element":
return
output.write("/**\n")
output.write(' * Unsets the value of the "{0}" attribute of the given \n'.format(attName))
output.write(" * {0}_t structure.\n *\n".format(element))
output.write(" * @param {0} the {1}_t structure.\n *\n".format(strFunctions.objAbbrev(element), element))
output.write(" * @return integer value indicating success/failure of the\n")
output.write(" * function. @if clike The value is drawn from the\n")
output.write(" * enumeration #OperationReturnValues_t. @endif@~ The possible values\n")
output.write(" * returned by this function are:\n")
output.write(" * @li @link OperationReturnValues_t#LIBSBML_OPERATION_SUCCESS LIBSBML_OPERATION_SUCCESS@endlink\n")
output.write(" * @li @link OperationReturnValues_t#LIBSBML_OPERATION_FAILED LIBSBML_OPERATION_FAILED@endlink\n")
output.write(" * @li @link OperationReturnValues_t#LIBSBML_INVALID_OBJECT LIBSBML_INVALID_OBJECT@endlink\n *\n")
output.write(" * @member of {0}_t\n".format(element))
output.write(" */\n")
output.write("LIBSBML_EXTERN\n")
output.write("int\n")
output.write("{0}_unset{1}".format(element, capAttName))
output.write("({0}_t * {1});\n\n\n".format(element, strFunctions.objAbbrev(element)))
def writeIsSetFunction(attrib, output, element):
att = generalFunctions.parseAttributeForC(attrib)
attName = att[0]
capAttName = att[1]
attType = att[2]
attTypeCode = att[3]
num = att[4]
if attrib['type'] != 'lo_element' and attrib['type'] != 'inline_lo_element':
output.write('/**\n')
output.write(
' * Predicate returning @c 1 if the given {0}_t structure\'s \"{1}\"\n'
.format(element, attName))
output.write(' * is set.\n *\n')
output.write(' * @param {0} the {1}_t structure.\n *\n'.format(
strFunctions.objAbbrev(element), element))
output.write(
' * @return @c 1 if the \"{0}\" of this {1}_t structure is\n'.
format(attName, element))
output.write(' * set, @c 0 otherwise.\n *\n')
output.write(' * @member of {0}_t\n'.format(element))
output.write(' */\n')
output.write('LIBSBML_EXTERN\n')
output.write('int\n')
output.write('{0}_isSet{1}'.format(element, capAttName))
output.write('(const {0}_t * {1});\n\n\n'.format(
element, strFunctions.objAbbrev(element)))
def writeSetFunction(attrib, output, element):
att = generalFunctions.parseAttributeForC(attrib)
attName = att[0]
capAttName = att[1]
attType = att[2]
attTypeCode = att[3]
num = att[4]
if attrib['type'] != 'element' and attrib['type'] != 'lo_element':
output.write('LIBSEDML_EXTERN\n')
output.write('int\n')
output.write('{0}_set{1}'.format(element, capAttName))
output.write('({0}_t * {1},'.format(element, strFunctions.objAbbrev(element)))
output.write(' {0} {1});\n\n\n'.format(attTypeCode, attName))
elif attrib['type'] == 'element':
if attrib['name'] == 'Math' or attrib['name'] == 'math':
output.write('LIBSEDML_EXTERN\n')
output.write('int\n')
output.write('{0}_setMath'.format(element))
output.write('({0}_t * {1},'.format(element, strFunctions.objAbbrev(element)))
output.write(' ASTNode_t* {0});\n\n\n'.format(attName))
else:
output.write('LIBSEDML_EXTERN\n')
output.write('int\n')
output.write('{0}_set{1}'.format(element, capAttName))
output.write('({0}_t * {1},'.format(element, strFunctions.objAbbrev(element)))
output.write(' {0}_t* {1});\n\n\n'.format(attrib['element'], attName))
def writeSetFunction(attrib, output, element):
att = generalFunctions.parseAttributeForC(attrib)
attName = att[0]
capAttName = att[1]
attType = att[2]
attTypeCode = att[3]
num = att[4]
if attrib['type'] == 'std::vector<double>':
return
elif attrib['type'] != 'element' and attrib['type'] != 'lo_element' and attrib['type'] != 'XMLNode*':
output.write('LIBSEDML_EXTERN\n')
output.write('int\n')
output.write('{0}_set{1}'.format(element, capAttName))
output.write('({0}_t * {1},'.format(element, strFunctions.objAbbrev(element)))
output.write(' {0} {1});\n\n\n'.format(attTypeCode, attName))
elif attrib['type'] == 'XMLNode*':
output.write('LIBSEDML_EXTERN\n')
output.write('int\n')
output.write('{0}_set{1}'.format(element, capAttName))
output.write('({0}_t * {1},'.format(element, strFunctions.objAbbrev(element)))
output.write(' XMLNode_t* {0});\n\n\n'.format(attName))
elif attrib['type'] == 'element':
if attrib['name'] == 'Math' or attrib['name'] == 'math':
output.write('LIBSEDML_EXTERN\n')
output.write('int\n')
output.write('{0}_setMath'.format(element))
output.write('({0}_t * {1},'.format(element, strFunctions.objAbbrev(element)))
output.write(' ASTNode_t* {0});\n\n\n'.format(attName))
else:
output.write('LIBSEDML_EXTERN\n')
output.write('int\n')
output.write('{0}_set{1}'.format(element, capAttName))
output.write('({0}_t * {1},'.format(element, strFunctions.objAbbrev(element)))
output.write(' {0}_t* {1});\n\n\n'.format(attrib['element'], attName))
def writeConstructors(element, package, output):
indent = strFunctions.getIndent(element)
output.write('/**\n')
output.write(
' * Creates a new {0}_t structure using the given SBML @p level and\n'.
format(element))
output.write(' * @p version values.\n *\n')
output.write(
' * @param level an unsigned int, the SBML level to assign to this\n')
output.write(' * {0}_t structure.\n *\n'.format(element))
output.write(
' * @param version an unsigned int, the SBML version to assign to this\n'
)
output.write(' * {0}_t structure.\n *\n'.format(element))
output.write(
' * @returns the newly-created {0}_t structure, or a null pointer if\n'
.format(element))
output.write(' * an error occurred during construction.\n *\n')
output.write(' * @copydetails doc_note_setting_lv\n *\n')
output.write(' * @memberof {0}_t\n'.format(element))
output.write(' */\n')
output.write('LIBSBML_EXTERN\n')
output.write('{0}_t *\n'.format(element))
output.write('{0}_create'.format(element))
output.write('(unsigned int level, unsigned int version,\n')
output.write('{0} unsigned int pkgVersion);\n\n\n'.format(indent))
# output.write('LIBSBML_EXTERN\n')
# output.write('{0}_t *\n'.format(element))
# output.write('{0}_createWithNS'.format(element))
# output.write('(SBMLNamespaces_t *sbmlns);\n\n\n')
output.write('/**\n')
output.write(' * Frees the given {0}_t structure.\n * \n'.format(element))
output.write(' * @param {0} the {1}_t structure to be freed.\n *\n'.format(
strFunctions.objAbbrev(element), element))
output.write(' * @memberof {0}_t\n'.format(element))
output.write(' */\n')
output.write('LIBSBML_EXTERN\n')
output.write('void\n')
output.write('{0}_free'.format(element))
output.write('({0}_t * {1});\n\n\n'.format(
element, strFunctions.objAbbrev(element)))
output.write('/**\n')
output.write(
' * Creates a deep copy of the given {0}_t structure.\n * \n'.format(
element))
output.write(
' * @param {0} the {1}_t structure to be copied.\n *\n'.format(
strFunctions.objAbbrev(element), element))
output.write(
' * @returns a (deep) copy of the given {0}_t structure, or a null\n'.
format(element))
output.write(' * pointer if a failure occurred.\n *\n')
output.write(' * @memberof {0}_t\n'.format(element))
output.write(' */\n')
output.write('LIBSBML_EXTERN\n')
output.write('{0}_t *\n'.format(element))
output.write('{0}_clone'.format(element))
output.write('({0}_t * {1});\n\n\n'.format(
element, strFunctions.objAbbrev(element)))
def writeListOfSubFunctions(attrib, output, element, elementDict):
loname = generalFunctions.writeListOf(strFunctions.cap(attrib['name']))
output.write(' /**\n')
output.write(' * Returns the \"{0}\"'.format(loname))
output.write(' in this {0} object.\n'.format(element))
output.write(' *\n')
output.write(' * @return the \"{0}\"'.format(loname))
output.write(' attribute of this {0}.\n'.format(element))
output.write(' */\n')
output.write(' const {0}*'.format(loname))
output.write(' getListOf{0}s() const;\n\n\n'.format(strFunctions.cap(attrib['name'])))
writeListOfHeader.writeGetFunctions(output, strFunctions.cap(attrib['name']), attrib['element'], True, element)
output.write(' /**\n')
output.write(' * Adds a copy the given \"{0}\" to this {1}.\n'.format(attrib['element'], element))
output.write(' *\n')
output.write(' * @param {0}; the {1} object to add\n'.format(strFunctions.objAbbrev(attrib['element']), attrib['element']))
output.write(' *\n')
output.write(' * @return integer value indicating success/failure of the\n')
output.write(' * function. @if clike The value is drawn from the\n')
output.write(' * enumeration #OperationReturnValues_t. @endif The possible values\n')
output.write(' * returned by this function are:\n')
output.write(' * @li LIBSEDML_OPERATION_SUCCESS\n')
output.write(' * @li LIBSEDML_INVALID_ATTRIBUTE_VALUE\n')
output.write(' */\n')
output.write(' int add{0}(const {1}* {2});\n\n\n'.format(strFunctions.cap(attrib['name']), attrib['element'], strFunctions.objAbbrev(attrib['element'])))
output.write(' /**\n')
output.write(' * Get the number of {0} objects in this {1}.\n'.format(attrib['element'], element))
output.write(' *\n')
output.write(' * @return the number of {0} objects in this {1}\n'.format(attrib['element'], element))
output.write(' */\n')
output.write(' unsigned int getNum{0}s() const;\n\n\n'.format(strFunctions.cap(attrib['name'])))
if attrib.has_key('abstract') == False or (attrib.has_key('abstract') and attrib['abstract'] == False):
output.write(' /**\n')
output.write(' * Creates a new {0} object, adds it to this {1}s\n'.format(attrib['element'], element))
output.write(' * {0} and returns the {1} object created.\n'.format(loname, attrib['element']))
output.write(' *\n')
output.write(' * @return a new {0} object instance\n'.format(attrib['element']))
output.write(' *\n')
output.write(' * @see add{0}(const {1}* {2})\n'.format(strFunctions.cap(attrib['name']), attrib['element'], strFunctions.objAbbrev(attrib['element'])))
output.write(' */\n')
output.write(' {0}* create{1}();\n\n\n'.format(attrib['element'], strFunctions.cap(attrib['name'])))
elif attrib.has_key('concrete'):
for elem in attrib['concrete']:
output.write(' /**\n')
output.write(' * Creates a new {0} object, adds it to this {1}s\n'.format(elem['element'], element))
output.write(' * {0} and returns the {1} object created.\n'.format(loname, elem['element']))
output.write(' *\n')
output.write(' * @return a new {0} object instance\n'.format(elem['element']))
output.write(' *\n')
output.write(' * @see add{0}(const {0}* {1})\n'.format(attrib['element'], strFunctions.objAbbrev(attrib['element'])))
output.write(' */\n')
output.write(' {0}* create{1}();\n\n\n'.format(elem['element'], strFunctions.cap(elem['name'])))
writeListOfHeader.writeRemoveFunctions(output, strFunctions.cap(attrib['name']), attrib['element'], True, element)
def writeHasReqdElementsFunction(output, element):
output.write("/**\n")
output.write(" * Predicate returning @c 1 or *c 0 depending on whether all the required\n")
output.write(" * sub-elements of the given {0}_t structure have been set.\n *\n".format(element))
output.write(" * @param {0} the {1}_t structure to check.\n *\n".format(strFunctions.objAbbrev(element), element))
output.write(" * @return @c 1 if all the required sub-elements for this\n")
output.write(" * structure have been defined, @c 0 otherwise.\n *\n")
output.write(" * @member of {0}_t\n".format(element))
output.write(" */\n")
output.write("LIBSBML_EXTERN\n")
output.write("int\n")
output.write("{0}_hasRequiredElements".format(element))
output.write("(const {0}_t * {1});\n\n\n".format(element, strFunctions.objAbbrev(element)))
def writeConstructors(element, package, output):
indent = strFunctions.getIndent(element)
output.write("/**\n")
output.write(" * Creates a new {0}_t structure using the given SBML @p level and\n".format(element))
output.write(" * @p version values.\n *\n")
output.write(" * @param level an unsigned int, the SBML level to assign to this\n")
output.write(" * {0}_t structure.\n *\n".format(element))
output.write(" * @param version an unsigned int, the SBML version to assign to this\n")
output.write(" * {0}_t structure.\n *\n".format(element))
output.write(" * @returns the newly-created {0}_t structure, or a null pointer if\n".format(element))
output.write(" * an error occurred during construction.\n *\n")
output.write(" * @copydetails doc_note_setting_lv\n *\n")
output.write(" * @memberof {0}_t\n".format(element))
output.write(" */\n")
output.write("LIBSBML_EXTERN\n")
output.write("{0}_t *\n".format(element))
output.write("{0}_create".format(element))
output.write("(unsigned int level, unsigned int version,\n")
output.write("{0} unsigned int pkgVersion);\n\n\n".format(indent))
# output.write('LIBSBML_EXTERN\n')
# output.write('{0}_t *\n'.format(element))
# output.write('{0}_createWithNS'.format(element))
# output.write('(SBMLNamespaces_t *sbmlns);\n\n\n')
output.write("/**\n")
output.write(" * Frees the given {0}_t structure.\n * \n".format(element))
output.write(
" * @param {0} the {1}_t structure to be freed.\n *\n".format(strFunctions.objAbbrev(element), element)
)
output.write(" * @memberof {0}_t\n".format(element))
output.write(" */\n")
output.write("LIBSBML_EXTERN\n")
output.write("void\n")
output.write("{0}_free".format(element))
output.write("({0}_t * {1});\n\n\n".format(element, strFunctions.objAbbrev(element)))
output.write("/**\n")
output.write(" * Creates a deep copy of the given {0}_t structure.\n * \n".format(element))
output.write(
" * @param {0} the {1}_t structure to be copied.\n *\n".format(strFunctions.objAbbrev(element), element)
)
output.write(" * @returns a (deep) copy of the given {0}_t structure, or a null\n".format(element))
output.write(" * pointer if a failure occurred.\n *\n")
output.write(" * @memberof {0}_t\n".format(element))
output.write(" */\n")
output.write("LIBSBML_EXTERN\n")
output.write("{0}_t *\n".format(element))
output.write("{0}_clone".format(element))
output.write("({0}_t * {1});\n\n\n".format(element, strFunctions.objAbbrev(element)))
def writeConstructors(element, package, output):
indent = strFunctions.getIndent(element)
output.write('LIBSEDML_EXTERN\n')
output.write('{0}_t *\n'.format(element))
output.write('{0}_create'.format(element))
output.write('(unsigned int level, unsigned int version);\n\n\n')
# output.write('LIBSEDML_EXTERN\n')
# output.write('{0}_t *\n'.format(element))
# output.write('{0}_createWithNS'.format(element))
# output.write('(SedNamespaces_t *sedmlns);\n\n\n')
output.write('LIBSEDML_EXTERN\n')
output.write('void\n')
output.write('{0}_free'.format(element))
output.write('({0}_t * {1});\n\n\n'.format(element, strFunctions.objAbbrev(element)))
output.write('LIBSEDML_EXTERN\n')
output.write('{0}_t *\n'.format(element))
output.write('{0}_clone'.format(element))
output.write('({0}_t * {1});\n\n\n'.format(element, strFunctions.objAbbrev(element)))
def writeConstructors(element, package, output):
indent = strFunctions.getIndent(element)
output.write('LIBSEDML_EXTERN\n')
output.write('{0}_t *\n'.format(element))
output.write('{0}_create'.format(element))
output.write('(unsigned int level, unsigned int version);\n\n\n')
# output.write('LIBSEDML_EXTERN\n')
# output.write('{0}_t *\n'.format(element))
# output.write('{0}_createWithNS'.format(element))
# output.write('(SedNamespaces_t *sedmlns);\n\n\n')
output.write('LIBSEDML_EXTERN\n')
output.write('void\n')
output.write('{0}_free'.format(element))
output.write('({0}_t * {1});\n\n\n'.format(element, strFunctions.objAbbrev(element)))
output.write('LIBSEDML_EXTERN\n')
output.write('{0}_t *\n'.format(element))
output.write('{0}_clone'.format(element))
output.write('({0}_t * {1});\n\n\n'.format(element, strFunctions.objAbbrev(element)))
def writeHasReqdElementsFunction(output, element):
varname = strFunctions.objAbbrev(element)
output.write('LIBSBML_EXTERN\n')
output.write('int\n')
output.write('{0}_hasRequiredElements'.format(element))
output.write('(const {0}_t * {1})\n'.format(element, varname))
output.write('{\n')
output.write('\treturn ({0} != NULL) ? static_cast<int>({0}->hasRequiredElements()) : 0;\n'.format(varname))
output.write('}\n\n\n')
def writeAddFunction(code, type, listOf, name):
code.write('/**\n')
code.write(' * Adds a copy the given \"{0}\" to this {1}.\n'.format(
type, listOf))
code.write(' *\n')
code.write(' * @param {0}; the {1} object to add\n'.format(
strFunctions.objAbbrev(type), type))
code.write(' *\n')
code.write(' * @return integer value indicating success/failure of the\n')
code.write(' * function. @if clike The value is drawn from the\n')
code.write(
' * enumeration #OperationReturnValues_t. @endif The possible values\n'
)
code.write(' * returned by this function are:\n')
code.write(' * @li LIBSBML_OPERATION_SUCCESS\n')
code.write(' * @li LIBSBML_INVALID_ATTRIBUTE_VALUE\n')
code.write(' */\n')
code.write('int\n')
code.write('{0}::add{1}(const {2}* {3})\n'.format(
listOf, strFunctions.cap(name), type, strFunctions.objAbbrev(type)))
code.write('{\n')
code.write(' if ({0} == NULL)\n'.format(strFunctions.objAbbrev(type)))
code.write(' {\n')
code.write(' return LIBSBML_OPERATION_FAILED;\n')
code.write(' }\n')
code.write(' else if ({0}->hasRequiredAttributes() == false)\n'.format(
strFunctions.objAbbrev(type)))
code.write(' {\n')
code.write(' return LIBSBML_INVALID_OBJECT;\n')
code.write(' }\n')
code.write(' else if (getLevel() != {0}->getLevel())\n'.format(
strFunctions.objAbbrev(type)))
code.write(' {\n')
code.write(' return LIBSBML_LEVEL_MISMATCH;\n')
code.write(' }\n')
code.write(' else if (getVersion() != {0}->getVersion())\n'.format(
strFunctions.objAbbrev(type)))
code.write(' {\n')
code.write(' return LIBSBML_VERSION_MISMATCH;\n')
code.write(' }\n')
code.write(
' else if (matchesRequiredSBMLNamespacesForAddition(static_cast<const SBase *>({0})) == false)\n'
.format(strFunctions.objAbbrev(type)))
code.write(' {\n')
code.write(' return LIBSBML_NAMESPACES_MISMATCH;\n')
code.write(' }\n')
code.write(' else\n')
code.write(' {\n')
code.write('\tappend({0});\n'.format(strFunctions.objAbbrev(type)))
code.write(' return LIBSBML_OPERATION_SUCCESS;\n')
code.write(' }\n')
code.write('}\n\n\n')
def writeHasReqdElementsFunction(output, element):
output.write('/**\n')
output.write(
' * Predicate returning @c 1 or *c 0 depending on whether all the required\n'
)
output.write(
' * sub-elements of the given {0}_t structure have been set.\n *\n'.
format(element))
output.write(' * @param {0} the {1}_t structure to check.\n *\n'.format(
strFunctions.objAbbrev(element), element))
output.write(' * @return @c 1 if all the required sub-elements for this\n')
output.write(' * structure have been defined, @c 0 otherwise.\n *\n')
output.write(' * @member of {0}_t\n'.format(element))
output.write(' */\n')
output.write('LIBSBML_EXTERN\n')
output.write('int\n')
output.write('{0}_hasRequiredElements'.format(element))
output.write('(const {0}_t * {1});\n\n\n'.format(
element, strFunctions.objAbbrev(element)))
def writeIsSetFunction(attrib, output, element):
att = generalFunctions.parseAttributeForC(attrib)
attName = att[0]
capAttName = att[1]
attType = att[2]
attTypeCode = att[3]
num = att[4]
if attrib["type"] != "lo_element" and attrib["type"] != "inline_lo_element":
output.write("/**\n")
output.write(' * Predicate returning @c 1 if the given {0}_t structure\'s "{1}"\n'.format(element, attName))
output.write(" * is set.\n *\n")
output.write(" * @param {0} the {1}_t structure.\n *\n".format(strFunctions.objAbbrev(element), element))
output.write(' * @return @c 1 if the "{0}" of this {1}_t structure is\n'.format(attName, element))
output.write(" * set, @c 0 otherwise.\n *\n")
output.write(" * @member of {0}_t\n".format(element))
output.write(" */\n")
output.write("LIBSBML_EXTERN\n")
output.write("int\n")
output.write("{0}_isSet{1}".format(element, capAttName))
output.write("(const {0}_t * {1});\n\n\n".format(element, strFunctions.objAbbrev(element)))
def writeListOfSubElements(attrib, output, element):
loname = generalFunctions.writeListOf(strFunctions.cap(attrib['name']))
output.write('LIBSEDML_EXTERN\n')
output.write('int\n')
output.write('{0}_add{1}({0}_t * {2}, '.format(element, strFunctions.cap(attrib['name']), strFunctions.objAbbrev(element)))
output.write('{0}_t * {1});\n\n\n'.format(attrib['element'], strFunctions.objAbbrev(attrib['element'])))
if attrib.has_key('abstract') == False or (attrib.has_key('abstract') and attrib['abstract'] == False):
output.write('LIBSEDML_EXTERN\n')
output.write('{0}_t *\n'.format(attrib['element']))
output.write('{0}_create{1}({0}_t * {2}' .format(element, strFunctions.cap(attrib['name']), strFunctions.objAbbrev(element)))
output.write(');\n\n\n')
elif attrib.has_key('concrete'):
for elem in attrib['concrete']:
output.write('LIBSEDML_EXTERN\n')
output.write('{0}_t *\n'.format(elem['element']))
output.write('{0}_create{1}({0}_t * {2}' .format(element, strFunctions.cap(elem['name']), strFunctions.objAbbrev(element)))
output.write(');\n\n\n')
output.write('LIBSEDML_EXTERN\n')
output.write('SedListOf_t *\n')
output.write('{0}_get{1}({0}_t * {2})'.format(element, loname, strFunctions.objAbbrev(element)))
output.write(';\n\n\n')
output.write('LIBSEDML_EXTERN\n')
output.write('{0}_t *\n'.format(attrib['element']))
output.write('{0}_get{1}({0}_t * {2}, '.format(element, strFunctions.cap(attrib['name']), strFunctions.objAbbrev(element)))
output.write('unsigned int n);\n\n\n')
output.write('LIBSEDML_EXTERN\n')
output.write('{0}_t *\n'.format(attrib['element']))
output.write('{0}_get{1}ById({0}_t * {2}, '.format(element, strFunctions.cap(attrib['name']), strFunctions.objAbbrev(element)))
output.write('const char * sid);\n\n\n')
output.write('LIBSEDML_EXTERN\n')
output.write('unsigned int\n')
output.write('{0}_getNum{1}s({0}_t * {2}' .format(element, strFunctions.cap(attrib['name']), strFunctions.objAbbrev(element)))
output.write(');\n\n\n')
output.write('LIBSEDML_EXTERN\n')
output.write('{0}_t *\n'.format(attrib['element']))
output.write('{0}_remove{1}({0}_t * {2}, '.format(element, strFunctions.cap(attrib['name']), strFunctions.objAbbrev(element)))
output.write('unsigned int n);\n\n\n')
output.write('LIBSEDML_EXTERN\n')
output.write('{0}_t *\n'.format(attrib['element']))
output.write('{0}_remove{1}ById({0}_t * {2}, '.format(element, strFunctions.cap(attrib['name']), strFunctions.objAbbrev(element)))
output.write('const char * sid);\n\n\n')
def writeHasReqdAttrFunction(output, element):
varname = strFunctions.objAbbrev(element)
output.write('/**\n')
output.write(' * write comments\n')
output.write(' */\n')
output.write('LIBSEDML_EXTERN\n')
output.write('int\n')
output.write('{0}_hasRequiredAttributes'.format(element))
output.write('({0}_t * {1})\n'.format(element, varname))
output.write('{\n')
output.write(' return ({0} != NULL) ? static_cast<int>({0}->hasRequiredAttributes()) : 0;\n'.format(varname))
output.write('}\n\n\n')
def writeIsSetFunction(attrib, output, element):
att = generalFunctions.parseAttributeForC(attrib)
attName = att[0]
capAttName = att[1]
attType = att[2]
attTypeCode = att[3]
num = att[4]
if attrib['type'] != 'lo_element':
output.write('LIBSEDML_EXTERN\n')
output.write('int\n')
output.write('{0}_isSet{1}'.format(element, capAttName))
output.write('({0}_t * {1});\n\n\n'.format(element, strFunctions.objAbbrev(element)))
def writeHasReqdAttrFunction(output, element):
varname = strFunctions.objAbbrev(element)
output.write('/**\n')
output.write(' * write comments\n')
output.write(' */\n')
output.write('LIBSEDML_EXTERN\n')
output.write('int\n')
output.write('{0}_hasRequiredAttributes'.format(element))
output.write('({0}_t * {1})\n'.format(element, varname))
output.write('{\n')
output.write('\treturn ({0} != NULL) ? static_cast<int>({0}->hasRequiredAttributes()) : 0;\n'.format(varname))
output.write('}\n\n\n')
def writeUnsetFunction(attrib, output, element):
att = generalFunctions.parseAttributeForC(attrib)
attName = att[0]
capAttName = att[1]
attType = att[2]
attTypeCode = att[3]
num = att[4]
if attrib['type'] == 'element' or attrib['type'] == 'lo_element' or attrib[
'type'] == 'inline_lo_element':
return
output.write('/**\n')
output.write(
' * Unsets the value of the \"{0}\" attribute of the given \n'.format(
attName))
output.write(' * {0}_t structure.\n *\n'.format(element))
output.write(' * @param {0} the {1}_t structure.\n *\n'.format(
strFunctions.objAbbrev(element), element))
output.write(
' * @return integer value indicating success/failure of the\n')
output.write(' * function. @if clike The value is drawn from the\n')
output.write(
' * enumeration #OperationReturnValues_t. @endif@~ The possible values\n'
)
output.write(' * returned by this function are:\n')
output.write(
' * @li @link OperationReturnValues_t#LIBSBML_OPERATION_SUCCESS LIBSBML_OPERATION_SUCCESS@endlink\n'
)
output.write(
' * @li @link OperationReturnValues_t#LIBSBML_OPERATION_FAILED LIBSBML_OPERATION_FAILED@endlink\n'
)
output.write(
' * @li @link OperationReturnValues_t#LIBSBML_INVALID_OBJECT LIBSBML_INVALID_OBJECT@endlink\n *\n'
)
output.write(' * @member of {0}_t\n'.format(element))
output.write(' */\n')
output.write('LIBSBML_EXTERN\n')
output.write('int\n')
output.write('{0}_unset{1}'.format(element, capAttName))
output.write('({0}_t * {1});\n\n\n'.format(
element, strFunctions.objAbbrev(element)))
def writeClass(header, nameOfElement, typeOfElement, nameOfPackage, elementDict):
header.write('class LIBSEDML_EXTERN {0} :'.format(generalFunctions.writeListOf(nameOfElement)))
header.write(' public SedListOf\n{0}\n\n'.format('{'))
header.write('public:\n\n')
writeConstructors(nameOfElement, typeOfElement, nameOfPackage, header)
writeGetFunctions(header, nameOfElement, typeOfElement)
header.write(' /**\n')
header.write(' * Adds a copy the given \"{0}\" to this {1}.\n'.format(nameOfElement, generalFunctions.writeListOf(nameOfElement)))
header.write(' *\n')
header.write(' * @param {0}; the {1} object to add\n'.format(strFunctions.objAbbrev(nameOfElement), nameOfElement))
header.write(' *\n')
header.write(' * @return integer value indicating success/failure of the\n')
header.write(' * function. @if clike The value is drawn from the\n')
header.write(' * enumeration #OperationReturnValues_t. @endif The possible values\n')
header.write(' * returned by this function are:\n')
header.write(' * @li LIBSEDML_OPERATION_SUCCESS\n')
header.write(' * @li LIBSEDML_INVALID_ATTRIBUTE_VALUE\n')
header.write(' */\n')
header.write(' int add{0}(const {1}* {2});\n\n\n'.format(nameOfElement, typeOfElement, strFunctions.objAbbrev(nameOfElement)))
header.write(' /**\n')
header.write(' * Get the number of {0} objects in this {1}.\n'.format(nameOfElement, generalFunctions.writeListOf(nameOfElement)))
header.write(' *\n')
header.write(' * @return the number of {0} objects in this {1}\n'.format(nameOfElement, generalFunctions.writeListOf(nameOfElement)))
header.write(' */\n')
header.write(' unsigned int getNum{0}s() const;\n\n\n'.format(nameOfElement))
if elementDict.has_key('abstract') == False or (elementDict.has_key('abstract') and elementDict['abstract'] == False):
header.write(' /**\n')
header.write(' * Creates a new {0} object, adds it to the\n'.format(nameOfElement))
header.write(' * {0} and returns the {1} object created.\n'.format(generalFunctions.writeListOf(nameOfElement), nameOfElement))
header.write(' *\n')
header.write(' * @return a new {0} object instance\n'.format(nameOfElement))
header.write(' *\n')
header.write(' * @see add{0}(const {1}* {2})\n'.format(nameOfElement, typeOfElement, strFunctions.objAbbrev(nameOfElement)))
header.write(' */\n')
header.write(' {0}* create{1}();\n\n\n'.format(typeOfElement, nameOfElement))
elif elementDict.has_key('concrete'):
for elem in elementDict['concrete']:
header.write(' /**\n')
header.write(' * Creates a new {0} object, adds it to the\n'.format(nameOfElement))
header.write(' * {0} and returns the {1} object created.\n'.format(generalFunctions.writeListOf(nameOfElement), nameOfElement))
header.write(' *\n')
header.write(' * @return a new {0} object instance\n'.format(nameOfElement))
header.write(' *\n')
header.write(' * @see add{0}(const {1}* {2})\n'.format(nameOfElement, typeOfElement, strFunctions.objAbbrev(nameOfElement)))
header.write(' */\n')
header.write(' {0}* create{1}();\n\n\n'.format(elem['element'], strFunctions.cap(elem['name'])))
writeRemoveFunctions(header, nameOfElement, typeOfElement)
generalFunctions.writeCommonHeaders(header, nameOfElement, None, True)
header.write('protected:\n\n')
writeProtectedFunctions(header, nameOfElement, nameOfPackage)
header.write('\n};\n\n')
def writeClass(header, nameOfElement, typeOfElement, nameOfPackage, elementDict):
header.write('class LIBSEDML_EXTERN {0} :'.format(generalFunctions.writeListOf(nameOfElement)))
header.write(' public SedListOf\n{0}\n\n'.format('{'))
header.write('public:\n\n')
writeConstructors(nameOfElement, typeOfElement, nameOfPackage, header)
writeGetFunctions(header, nameOfElement, typeOfElement)
header.write('\t/**\n')
header.write('\t * Adds a copy the given \"{0}\" to this {1}.\n'.format(nameOfElement, generalFunctions.writeListOf(nameOfElement)))
header.write('\t *\n')
header.write('\t * @param {0}; the {1} object to add\n'.format(strFunctions.objAbbrev(nameOfElement), nameOfElement))
header.write('\t *\n')
header.write('\t * @return integer value indicating success/failure of the\n')
header.write('\t * function. @if clike The value is drawn from the\n')
header.write('\t * enumeration #OperationReturnValues_t. @endif The possible values\n')
header.write('\t * returned by this function are:\n')
header.write('\t * @li LIBSEDML_OPERATION_SUCCESS\n')
header.write('\t * @li LIBSEDML_INVALID_ATTRIBUTE_VALUE\n')
header.write('\t */\n')
header.write('\tint add{0}(const {1}* {2});\n\n\n'.format(nameOfElement, typeOfElement, strFunctions.objAbbrev(nameOfElement)))
header.write('\t/**\n')
header.write('\t * Get the number of {0} objects in this {1}.\n'.format(nameOfElement, generalFunctions.writeListOf(nameOfElement)))
header.write('\t *\n')
header.write('\t * @return the number of {0} objects in this {1}\n'.format(nameOfElement, generalFunctions.writeListOf(nameOfElement)))
header.write('\t */\n')
header.write('\tunsigned int getNum{0}s() const;\n\n\n'.format(nameOfElement))
if elementDict.has_key('abstract') == False or (elementDict.has_key('abstract') and elementDict['abstract'] == False):
header.write('\t/**\n')
header.write('\t * Creates a new {0} object, adds it to the\n'.format(nameOfElement))
header.write('\t * {0} and returns the {1} object created. \n'.format(generalFunctions.writeListOf(nameOfElement), nameOfElement))
header.write('\t *\n')
header.write('\t * @return a new {0} object instance\n'.format(nameOfElement))
header.write('\t *\n')
header.write('\t * @see add{0}(const {1}* {2})\n'.format(nameOfElement, typeOfElement, strFunctions.objAbbrev(nameOfElement)))
header.write('\t */\n')
header.write('\t{0}* create{1}();\n\n\n'.format(typeOfElement, nameOfElement))
elif elementDict.has_key('concrete'):
for elem in elementDict['concrete']:
header.write('\t/**\n')
header.write('\t * Creates a new {0} object, adds it to the\n'.format(nameOfElement))
header.write('\t * {0} and returns the {1} object created. \n'.format(generalFunctions.writeListOf(nameOfElement), nameOfElement))
header.write('\t *\n')
header.write('\t * @return a new {0} object instance\n'.format(nameOfElement))
header.write('\t *\n')
header.write('\t * @see add{0}(const {1}* {2})\n'.format(nameOfElement, typeOfElement, strFunctions.objAbbrev(nameOfElement)))
header.write('\t */\n')
header.write('\t{0}* create{1}();\n\n\n'.format(elem['element'], strFunctions.cap(elem['name'])))
writeRemoveFunctions(header, nameOfElement, typeOfElement)
generalFunctions.writeCommonHeaders(header, nameOfElement, None, True)
header.write('protected:\n\n')
writeProtectedFunctions(header, nameOfElement, nameOfPackage)
header.write('\n};\n\n')
def writeSetFunction(attrib, output, element):
att = generalFunctions.parseAttributeForC(attrib)
attName = att[0]
cleanName = strFunctions.cleanStr(attName)
capAttName = att[1]
attType = att[2]
attTypeCode = att[3]
num = att[4]
if attrib['type'] == 'lo_element' or attrib['type'] == 'inline_lo_element':
return
if attrib['type'] == 'array':
return
varname = strFunctions.objAbbrev(element)
if attrib['type'] != 'element' and attrib['type'] != 'lo_element' and attrib['type'] != 'inline_lo_element':
output.write('LIBSBML_EXTERN\n')
output.write('int\n')
output.write('{0}_set{1}'.format(element, capAttName))
output.write('({0}_t * {1},'.format(element, varname))
output.write(' {0} {1})\n'.format(attTypeCode, cleanName))
output.write('{\n')
output.write(' if ({0} != NULL)\n'.format(varname))
if num or attrib['type'] == 'enum':
output.write(' return {1}->set{2}({0});\n'.format(cleanName, varname, capAttName))
elif attrib['type'] == 'array':
output.write(' return ({0} == NULL) ? {1}->unset{2}() : {1}->set{2}({0});\n'.format(cleanName, varname, capAttName))
else:
output.write(' return ({0} == NULL) ? {1}->set{2}("") : {1}->set{2}({0});\n'.format(cleanName, varname, capAttName))
output.write(' else\n')
output.write(' return LIBSBML_INVALID_OBJECT;\n')
# output.write(' return ({0} != NULL) ? {0}->set{1}({2}) : LIBSBML_INVALID_OBJECT;\n'.format(varname, capAttName, attName))
output.write('}\n\n\n')
elif attrib['type'] == 'element':
if attrib['name'] == 'Math' or attrib['name'] == 'math':
output.write('LIBSBML_EXTERN\n')
output.write('int\n')
output.write('{0}_set{1}'.format(element, capAttName))
output.write('({0}_t * {1},'.format(element, varname))
output.write(' const {0} {1})\n'.format('ASTNode_t*', cleanName))
output.write('{\n')
output.write('\treturn ({0} != NULL) ? {0}->set{1}({2}) : LIBSBML_INVALID_OBJECT;\n'.format(varname, capAttName, cleanName))
output.write('}\n\n\n')
else:
output.write('LIBSBML_EXTERN\n')
output.write('int\n')
output.write('{0}_set{1}'.format(element, capAttName))
output.write('({0}_t * {1},'.format(element, varname))
output.write(' {0}_t* {1})\n'.format(attrib['element'], cleanName))
output.write('{\n')
output.write('\treturn ({0} != NULL) ? {0}->set{1}({2}) : LIBSBML_INVALID_OBJECT;\n'.format(varname, capAttName, cleanName))
output.write('}\n\n\n')
def writeIsSetFunction(attrib, output, element):
att = generalFunctions.parseAttributeForC(attrib)
attName = att[0]
capAttName = att[1]
attType = att[2]
attTypeCode = att[3]
num = att[4]
if attrib['type'] == 'std::vector<double>':
return
elif attrib['type'] != 'lo_element':
output.write('LIBSEDML_EXTERN\n')
output.write('int\n')
output.write('{0}_isSet{1}'.format(element, capAttName))
output.write('({0}_t * {1});\n\n\n'.format(element, strFunctions.objAbbrev(element)))
def writeUnsetFunction(attrib, output, element):
att = generalFunctions.parseAttributeForC(attrib)
attName = att[0]
capAttName = att[1]
attType = att[2]
attTypeCode = att[3]
num = att[4]
if attrib['type'] == 'lo_element':
return
if attrib['type'] == 'std::vector<double>':
return
output.write('LIBSEDML_EXTERN\n')
output.write('int\n')
output.write('{0}_unset{1}'.format(element, capAttName))
output.write('({0}_t * {1});\n\n\n'.format(
element, strFunctions.objAbbrev(element)))
def writeConstructors(element, package, output):
indent = strFunctions.getIndent(element)
output.write('/**\n')
output.write(' * write comments\n')
output.write(' */\n')
output.write('LIBSEDML_EXTERN\n')
output.write('{0}_t *\n'.format(element))
output.write('{0}_create'.format(element))
output.write('(unsigned int level, unsigned int version)\n')
output.write('{\n')
output.write('\treturn new {0}(level, version);\n'.format(element))
output.write('}\n\n\n')
# output.write('/**\n')
# output.write(' * write comments\n')
# output.write(' */\n')
# output.write('LIBSEDML_EXTERN\n')
# output.write('{0}_t *\n'.format(element))
# output.write('{0}_createWithNS'.format(element))
# output.write('(SedNamespaces_t *sedmlns)\n')
# output.write('{\n')
# output.write('\treturn new {0}(sedmlns);\n'.format(element))
# output.write('}\n\n\n')
output.write('/**\n')
output.write(' * write comments\n')
output.write(' */\n')
output.write('LIBSEDML_EXTERN\n')
output.write('void\n')
output.write('{0}_free'.format(element))
output.write('({0}_t * {1})\n'.format(element,
strFunctions.objAbbrev(element)))
output.write('{\n')
output.write('\tif ({0} != NULL)\n'.format(
strFunctions.objAbbrev(element)))
output.write('\t\tdelete {0};\n'.format(strFunctions.objAbbrev(element)))
output.write('}\n\n\n')
output.write('/**\n')
output.write(' * write comments\n')
output.write(' */\n')
output.write('LIBSEDML_EXTERN\n')
output.write('{0}_t *\n'.format(element))
output.write('{0}_clone'.format(element))
output.write('({0}_t * {1})\n'.format(element,
strFunctions.objAbbrev(element)))
output.write('{\n')
output.write('\tif ({0} != NULL)\n'.format(
strFunctions.objAbbrev(element)))
output.write('\t{\n')
output.write('\t\treturn static_cast<{0}_t*>({1}->clone());\n'.format(
element, strFunctions.objAbbrev(element)))
output.write('\t}\n')
output.write('\telse\n')
output.write('\t{\n')
output.write('\t\treturn NULL;\n')
output.write('\t}\n')
output.write('}\n\n\n')
def writeSetFunction(attrib, output, element):
att = generalFunctions.parseAttributeForC(attrib)
attName = att[0]
capAttName = att[1]
attType = att[2]
attTypeCode = att[3]
num = att[4]
if attrib['type'] == 'lo_element':
return
varname = strFunctions.objAbbrev(element)
output.write('/**\n')
output.write(' * write comments\n')
output.write(' */\n')
if attrib['type'] != 'element' and attrib['type'] != 'lo_element':
output.write('LIBSEDML_EXTERN\n')
output.write('int\n')
output.write('{0}_set{1}'.format(element, capAttName))
output.write('({0}_t * {1},'.format(element, varname))
output.write(' {0} {1})\n'.format(attTypeCode, attName))
output.write('{\n')
output.write(
'\treturn ({0} != NULL) ? {0}->set{1}({2}) : LIBSEDML_INVALID_OBJECT;\n'
.format(varname, capAttName, attName))
output.write('}\n\n\n')
elif attrib['type'] == 'element':
if attrib['name'] == 'Math' or attrib['name'] == 'math':
output.write('LIBSEDML_EXTERN\n')
output.write('int\n')
output.write('{0}_set{1}'.format(element, capAttName))
output.write('({0}_t * {1},'.format(element, varname))
output.write(' {0} {1})\n'.format('ASTNode_t*', attName))
output.write('{\n')
output.write(
'\treturn ({0} != NULL) ? {0}->set{1}({2}) : LIBSEDML_INVALID_OBJECT;\n'
.format(varname, capAttName, attName))
output.write('}\n\n\n')
else:
output.write('LIBSEDML_EXTERN\n')
output.write('int\n')
output.write('{0}_set{1}'.format(element, capAttName))
output.write('({0}_t * {1},'.format(element, varname))
output.write(' {0}_t* {1})\n'.format(attrib['element'], attName))
output.write('{\n')
output.write(
'\treturn ({0} != NULL) ? {0}->set{1}({2}) : LIBSEDML_INVALID_OBJECT;\n'
.format(varname, capAttName, attName))
output.write('}\n\n\n')
def writeUnsetFunction(attrib, output, element):
att = generalFunctions.parseAttributeForC(attrib)
attName = att[0]
capAttName = att[1]
attType = att[2]
attTypeCode = att[3]
num = att[4]
if attrib['type'] == 'lo_element' or attrib['type'] == 'inline_lo_element' or attrib['type'] == 'element':
return
varname = strFunctions.objAbbrev(element)
output.write('LIBSBML_EXTERN\n')
output.write('int\n')
output.write('{0}_unset{1}'.format(element, capAttName))
output.write('({0}_t * {1})\n'.format(element, varname))
output.write('{\n')
output.write(' return ({0} != NULL) ? {0}->unset{1}() : LIBSBML_INVALID_OBJECT;\n'.format(varname, capAttName))
output.write('}\n\n\n')
def writeIsSetFunction(attrib, output, element):
att = generalFunctions.parseAttributeForC(attrib)
attName = att[0]
capAttName = att[1]
attType = att[2]
attTypeCode = att[3]
num = att[4]
if attrib['type'] == 'lo_element' or attrib['type'] == 'inline_lo_element':
return
varname = strFunctions.objAbbrev(element)
output.write('LIBSBML_EXTERN\n')
output.write('int\n')
output.write('{0}_isSet{1}'.format(element, capAttName))
output.write('(const {0}_t * {1})\n'.format(element, varname))
output.write('{\n')
output.write(' return ({0} != NULL) ? static_cast<int>({0}->isSet{1}()) : 0;\n'.format(varname, capAttName))
output.write('}\n\n\n')
def writeSetFunction(attrib, output, element):
att = generalFunctions.parseAttributeForC(attrib)
attName = att[0]
capAttName = att[1]
attType = att[2]
attTypeCode = att[3]
num = att[4]
if attrib['type'] == 'lo_element':
return
varname = strFunctions.objAbbrev(element)
output.write('/**\n')
output.write(' * write comments\n')
output.write(' */\n')
if attrib['type'] == 'std::vector<double>':
return
elif attrib['type'] != 'element' and attrib['type'] != 'lo_element':
output.write('LIBSEDML_EXTERN\n')
output.write('int\n')
output.write('{0}_set{1}'.format(element, capAttName))
output.write('({0}_t * {1},'.format(element, varname))
output.write(' {0} {1})\n'.format(attTypeCode, attName))
output.write('{\n')
output.write('\treturn ({0} != NULL) ? {0}->set{1}({2}) : LIBSEDML_INVALID_OBJECT;\n'.format(varname, capAttName, attName))
output.write('}\n\n\n')
elif attrib['type'] == 'element':
if attrib['name'] == 'Math' or attrib['name'] == 'math':
output.write('LIBSEDML_EXTERN\n')
output.write('int\n')
output.write('{0}_set{1}'.format(element, capAttName))
output.write('({0}_t * {1},'.format(element, varname))
output.write(' {0} {1})\n'.format('ASTNode_t*', attName))
output.write('{\n')
output.write('\treturn ({0} != NULL) ? {0}->set{1}({2}) : LIBSEDML_INVALID_OBJECT;\n'.format(varname, capAttName, attName))
output.write('}\n\n\n')
else:
output.write('LIBSEDML_EXTERN\n')
output.write('int\n')
output.write('{0}_set{1}'.format(element, capAttName))
output.write('({0}_t * {1},'.format(element, varname))
output.write(' {0}_t* {1})\n'.format(attrib['element'], attName))
output.write('{\n')
output.write('\treturn ({0} != NULL) ? {0}->set{1}({2}) : LIBSEDML_INVALID_OBJECT;\n'.format(varname, capAttName, attName))
output.write('}\n\n\n')
def writeConstructors(element, package, output):
indent = strFunctions.getIndent(element)
output.write('/**\n')
output.write(' * write comments\n')
output.write(' */\n')
output.write('LIBSEDML_EXTERN\n')
output.write('{0}_t *\n'.format(element))
output.write('{0}_create'.format(element))
output.write('(unsigned int level, unsigned int version)\n')
output.write('{\n')
output.write('\treturn new {0}(level, version);\n'.format(element))
output.write('}\n\n\n')
# output.write('/**\n')
# output.write(' * write comments\n')
# output.write(' */\n')
# output.write('LIBSEDML_EXTERN\n')
# output.write('{0}_t *\n'.format(element))
# output.write('{0}_createWithNS'.format(element))
# output.write('(SedNamespaces_t *sedmlns)\n')
# output.write('{\n')
# output.write('\treturn new {0}(sedmlns);\n'.format(element))
# output.write('}\n\n\n')
output.write('/**\n')
output.write(' * write comments\n')
output.write(' */\n')
output.write('LIBSEDML_EXTERN\n')
output.write('void\n')
output.write('{0}_free'.format(element))
output.write('({0}_t * {1})\n'.format(element, strFunctions.objAbbrev(element)))
output.write('{\n')
output.write('\tif ({0} != NULL)\n'.format(strFunctions.objAbbrev(element)))
output.write('\t\tdelete {0};\n'.format(strFunctions.objAbbrev(element)))
output.write('}\n\n\n')
output.write('/**\n')
output.write(' * write comments\n')
output.write(' */\n')
output.write('LIBSEDML_EXTERN\n')
output.write('{0}_t *\n'.format(element))
output.write('{0}_clone'.format(element))
output.write('({0}_t * {1})\n'.format(element, strFunctions.objAbbrev(element)))
output.write('{\n')
output.write('\tif ({0} != NULL)\n'.format(strFunctions.objAbbrev(element)))
output.write('\t{\n')
output.write('\t\treturn static_cast<{0}_t*>({1}->clone());\n'.format(element, strFunctions.objAbbrev(element)))
output.write('\t}\n')
output.write('\telse\n')
output.write('\t{\n')
output.write('\t\treturn NULL;\n')
output.write('\t}\n')
output.write('}\n\n\n')
def writeAddFunction(code, type, listOf, name):
code.write('/**\n')
code.write(' * Adds a copy the given \"{0}\" to this {1}.\n'.format(type, listOf))
code.write(' *\n')
code.write(' * @param {0}; the {1} object to add\n'.format(strFunctions.objAbbrev(type), type))
code.write(' *\n')
code.write(' * @return integer value indicating success/failure of the\n')
code.write(' * function. @if clike The value is drawn from the\n')
code.write(' * enumeration #OperationReturnValues_t. @endif The possible values\n')
code.write(' * returned by this function are:\n')
code.write(' * @li LIBSBML_OPERATION_SUCCESS\n')
code.write(' * @li LIBSBML_INVALID_ATTRIBUTE_VALUE\n')
code.write(' */\n')
code.write('int\n')
code.write('{0}::add{1}(const {2}* {3})\n'.format(listOf, strFunctions.cap(name), type, strFunctions.objAbbrev(type)))
code.write('{\n')
code.write(' if ({0} == NULL)\n'.format(strFunctions.objAbbrev(type)))
code.write(' {\n')
code.write(' return LIBSBML_OPERATION_FAILED;\n')
code.write(' }\n')
code.write(' else if ({0}->hasRequiredAttributes() == false)\n'.format(strFunctions.objAbbrev(type)))
code.write(' {\n')
code.write(' return LIBSBML_INVALID_OBJECT;\n')
code.write(' }\n')
code.write(' else if (getLevel() != {0}->getLevel())\n'.format(strFunctions.objAbbrev(type)))
code.write(' {\n')
code.write(' return LIBSBML_LEVEL_MISMATCH;\n')
code.write(' }\n')
code.write(' else if (getVersion() != {0}->getVersion())\n'.format(strFunctions.objAbbrev(type)))
code.write(' {\n')
code.write(' return LIBSBML_VERSION_MISMATCH;\n')
code.write(' }\n')
code.write(
' else if (matchesRequiredSBMLNamespacesForAddition(static_cast<const SBase *>({0})) == false)\n'.format(
strFunctions.objAbbrev(type)))
code.write(' {\n')
code.write(' return LIBSBML_NAMESPACES_MISMATCH;\n')
code.write(' }\n')
code.write(' else\n')
code.write(' {\n')
code.write('\tappend({0});\n'.format(strFunctions.objAbbrev(type)))
code.write(' return LIBSBML_OPERATION_SUCCESS;\n')
code.write(' }\n')
code.write('}\n\n\n')
def writeIsSetFunction(attrib, output, element):
att = generalFunctions.parseAttributeForC(attrib)
attName = att[0]
capAttName = att[1]
attType = att[2]
attTypeCode = att[3]
num = att[4]
if attrib['type'] == 'lo_element':
return
if attrib['type'] == 'std::vector<double>':
return
varname = strFunctions.objAbbrev(element)
output.write('/**\n')
output.write(' * write comments\n')
output.write(' */\n')
output.write('LIBSEDML_EXTERN\n')
output.write('int\n')
output.write('{0}_isSet{1}'.format(element, capAttName))
output.write('({0}_t * {1})\n'.format(element, varname))
output.write('{\n')
output.write('\treturn ({0} != NULL) ? static_cast<int>({0}->isSet{1}()) : 0;\n'.format(varname, capAttName))
output.write('}\n\n\n')
def writeSetFunction(attrib, output, element):
att = generalFunctions.parseAttributeForC(attrib)
attName = att[0]
capAttName = att[1]
attType = att[2]
attTypeCode = att[3]
num = att[4]
if attrib['type'] != 'element' and attrib[
'type'] != 'lo_element' and attrib[
'type'] != 'XMLNode*' and attrib['type'] != 'inline_lo_element':
output.write('/**\n')
output.write(
' * Sets the \"{0}\" attribute of the given {1}_t structure.\n *\n'
.format(attName, element))
if (attType == 'string'):
output.write(
' * This function copies the string given in @p string. If the string is\n'
)
output.write(
' * a null pointer, this function performs {0}_unset{1}() instead.\n *\n'
.format(element, capAttName))
output.write(' * @param {0} the {1}_t structure.\n *\n'.format(
strFunctions.objAbbrev(element), element))
output.write(
' * @param {0} the string to which the structures \"{1}\" attribute should be\n'
.format(strFunctions.cleanStr(attName), attName))
output.write(' * set.\n *\n')
output.write(
' * @return integer value indicating success/failure of the\n')
output.write(' * function. @if clike The value is drawn from the\n')
output.write(
' * enumeration #OperationReturnValues_t. @endif@~ The possible values\n'
)
output.write(' * returned by this function are:\n')
output.write(
' * @li @link OperationReturnValues_t#LIBSBML_OPERATION_SUCCESS LIBSBML_OPERATION_SUCCESS@endlink\n'
)
output.write(
' * @li @link OperationReturnValues_t#LIBSBML_INVALID_ATTRIBUTE_VALUE LIBSBML_INVALID_ATTRIBUTE_VALUE@endlink\n'
)
output.write(
' * @li @link OperationReturnValues_t#LIBSBML_INVALID_OBJECT LIBSBML_INVALID_OBJECT@endlink\n *\n'
)
if (attType == 'string'):
output.write(
' * @note Using this function with a null pointer for @p name is equivalent to\n'
)
output.write(
' * unsetting the value of the "name" attribute.\n * \n')
output.write(' * @member of {0}_t\n'.format(element))
output.write(' */\n')
output.write('LIBSBML_EXTERN\n')
output.write('int\n')
output.write('{0}_set{1}'.format(element, capAttName))
output.write('({0}_t * {1},'.format(element,
strFunctions.objAbbrev(element)))
output.write(' {0} {1});\n\n\n'.format(attTypeCode,
strFunctions.cleanStr(attName)))
elif attrib['type'] == 'XMLNode*':
output.write('LIBSBML_EXTERN\n')
output.write('int\n')
output.write('{0}_set{1}'.format(element, capAttName))
output.write('({0}_t * {1},'.format(element,
strFunctions.objAbbrev(element)))
output.write(' XMLNode_t* {0});\n\n\n'.format(
strFunctions.cleanStr(attName)))
elif attrib['type'] == 'element':
if attrib['name'] == 'Math' or attrib['name'] == 'math':
output.write('/**\n')
output.write(
' * Sets the mathematical expression of the given {0}_t structure.\n *\n'
.format(element))
output.write(' * @param {0} the {1}_t structure.\n *\n'.format(
strFunctions.objAbbrev(element), element))
output.write(
' * @param math an ASTNode_t structure to be assigned as the \"math\"\n'
)
output.write(' * subelement of this {0}_t.\n *\n'.format(element))
output.write(
' * @return integer value indicating success/failure of the\n')
output.write(
' * function. @if clike The value is drawn from the\n')
output.write(
' * enumeration #OperationReturnValues_t. @endif@~ The possible values\n'
)
output.write(' * returned by this function are:\n')
output.write(
' * @li @link OperationReturnValues_t#LIBSBML_OPERATION_SUCCESS LIBSBML_OPERATION_SUCCESS@endlink\n'
)
output.write(
' * @li @link OperationReturnValues_t#LIBSBML_INVALID_OBJECT LIBSBML_INVALID_OBJECT@endlink\n *\n'
)
output.write(' * @member of {0}_t\n'.format(element))
output.write(' */\n')
output.write('LIBSBML_EXTERN\n')
output.write('int\n')
output.write('{0}_setMath'.format(element))
output.write('({0}_t * {1},'.format(
element, strFunctions.objAbbrev(element)))
output.write(' const ASTNode_t* {0});\n\n\n'.format(
strFunctions.cleanStr(attName)))
else:
output.write('LIBSBML_EXTERN\n')
output.write('int\n')
output.write('{0}_set{1}'.format(element, capAttName))
output.write('({0}_t * {1},'.format(
element, strFunctions.objAbbrev(element)))
output.write(' {0}_t* {1});\n\n\n'.format(
attrib['element'], strFunctions.cleanStr(attName)))
def writeListOfSubFunctions(attrib, output, element, pkgName):
lotype = generalFunctions.getListOfClassName(attrib, strFunctions.cap(attrib['element']))
loname = generalFunctions.writeListOf(strFunctions.cap(attrib['name']))
att = generalFunctions.parseAttribute(attrib)
attName = att[0]
capAttName = att[1]
attType = att[2]
attTypeCode = att[3]
num = att[4]
output.write('/*\n')
output.write(' * Returns the \"{0}\"'.format(lotype))
output.write(' in this {0} object.\n'.format(element))
output.write(' */\n')
output.write('const {0}*\n'.format(lotype))
output.write('{0}::get{1}() const\n'.format(element, loname))
output.write('{\n')
output.write(' return &m{0};\n'.format(strFunctions.capp(attName)))
output.write('}\n\n\n')
output.write('/*\n')
output.write(' * Returns the \"{0}\"'.format(lotype))
output.write(' in this {0} object.\n'.format(element))
output.write(' */\n')
output.write('{0}*\n'.format(lotype))
output.write('{0}::get{1}()\n'.format(element, loname))
output.write('{\n')
output.write(' return &m{0};\n'.format(strFunctions.capp(attName)))
output.write('}\n\n\n')
writeListOfCode.writeRemoveFunctions(output, strFunctions.cap(attrib['name']), attrib['element'], True, element, capAttName, attrib)
writeListOfCode.writeGetFunctions(output, strFunctions.cap(attrib['name']), attrib['element'], True, element, capAttName, attrib)
output.write('/*\n')
output.write(' * Adds a copy the given \"{0}\" to this {1}.\n'.format(attrib['element'], element))
output.write(' *\n')
output.write(' * @param {0}; the {1} object to add\n'.format(strFunctions.objAbbrev(attrib['element']), attrib['element']))
output.write(' *\n')
output.write(' * @return integer value indicating success/failure of the\n')
output.write(' * function. @if clike The value is drawn from the\n')
output.write(' * enumeration #OperationReturnValues_t. @endif The possible values\n')
output.write(' * returned by this function are:\n')
output.write(' * @li LIBSBML_OPERATION_SUCCESS\n')
output.write(' * @li LIBSBML_INVALID_ATTRIBUTE_VALUE\n')
output.write(' */\n')
output.write('int\n')
output.write('{0}::add{1}(const {2}* {3})\n'.format(element, strFunctions.cap(attrib['name']), attrib['element'], strFunctions.objAbbrev(attrib['element'])))
output.write('{\n')
output.write(' if ({0} == NULL)\n'.format(strFunctions.objAbbrev(attrib['element'])))
output.write(' {\n')
output.write(' return LIBSBML_OPERATION_FAILED;\n')
output.write(' }\n')
output.write(' else if ({0}->hasRequiredAttributes() == false)\n'.format(strFunctions.objAbbrev(attrib['element'])))
output.write(' {\n')
output.write(' return LIBSBML_INVALID_OBJECT;\n')
output.write(' }\n')
output.write(' else if (getLevel() != {0}->getLevel())\n'.format(strFunctions.objAbbrev(attrib['element'])))
output.write(' {\n')
output.write(' return LIBSBML_LEVEL_MISMATCH;\n')
output.write(' }\n')
output.write(' else if (getVersion() != {0}->getVersion())\n'.format(strFunctions.objAbbrev(attrib['element'])))
output.write(' {\n')
output.write(' return LIBSBML_VERSION_MISMATCH;\n')
output.write(' }\n')
if not element.endswith('Plugin'):
output.write(
' else if (matchesRequiredSBMLNamespacesForAddition(static_cast<const SBase *>({0})) == false)\n'.format(
strFunctions.objAbbrev(attrib['element'])))
output.write(' {\n')
output.write(' return LIBSBML_NAMESPACES_MISMATCH;\n')
output.write(' }\n')
output.write(' else\n'.format(strFunctions.objAbbrev(attrib['element'])))
output.write(' {\n')
output.write(' m{0}.append({1});\n'.format(strFunctions.capp(attrib['name']),strFunctions.objAbbrev(attrib['element'])))
output.write(' return LIBSBML_OPERATION_SUCCESS;\n')
output.write(' }\n')
output.write('}\n\n\n')
output.write('/*\n')
output.write(' * Get the number of {0} objects in this {1}.\n'.format(attrib['element'], element))
output.write(' *\n')
output.write(' * @return the number of {0} objects in this {1}\n'.format(attrib['element'], element))
output.write(' */\n')
output.write('unsigned int\n')
output.write('{0}::getNum{1}() const\n'.format(element, strFunctions.capp(attrib['name'])))
output.write('{\n')
output.write(' return m{0}.size();\n'.format(strFunctions.capp(attrib['name'])))
output.write('}\n\n\n')
if attrib.has_key('abstract') == False or (attrib.has_key('abstract') and attrib['abstract'] == False):
output.write('/*\n')
output.write(' * Creates a new {0} object, adds it to this {1}s\n'.format(attrib['element'], element))
output.write(' * {0} and returns the {1} object created. \n'.format(element, attrib['element']))
output.write(' *\n')
output.write(' * @return a new {0} object instance\n'.format(attrib['element']))
output.write(' *\n')
output.write(' * @see add{0}(const {0}* {1})\n'.format(attrib['element'], strFunctions.objAbbrev(attrib['element'])))
output.write(' */\n')
output.write('{0}*\n'.format(attrib['element']))
output.write('{0}::create{1}()\n'.format(element, strFunctions.cap(attrib['name'])))
output.write('{\n')
output.write(' {0}* {1} = NULL;\n\n'.format(attrib['element'], strFunctions.objAbbrev(attrib['element'])))
output.write(' try\n')
output.write(' {\n')
output.write(' {0}_CREATE_NS({1}ns, getSBMLNamespaces());\n'.format(pkgName.upper(), pkgName.lower()))
output.write(
' {0} = new {1}({2}ns);\n'.format(strFunctions.objAbbrev(attrib['element']), attrib['element'], pkgName.lower()))
output.write(' delete {0}ns;\n'.format(pkgName.lower()))
output.write(' }\n')
output.write(' catch (...)\n')
output.write(' {\n')
output.write(' /* here we do not create a default object as the level/version must\n')
output.write(' * match the parent object\n')
output.write(' *\n')
output.write(' * do nothing\n')
output.write(' */\n')
output.write(' }\n\n')
output.write(' if({0} != NULL)\n'.format(strFunctions.objAbbrev(attrib['element'])))
output.write(' {\n')
output.write(' m{0}.appendAndOwn({1});\n'.format(strFunctions.capp(attrib['name']), strFunctions.objAbbrev(attrib['element'])))
output.write(' }\n\n')
output.write(' return {0};\n'.format(strFunctions.objAbbrev(attrib['element'])))
output.write('}\n\n\n')
elif attrib.has_key('concrete'):
for elem in generalFunctions.getConcretes(attrib['root'], attrib['concrete']):
output.write('/**\n')
output.write(' * Creates a new {0} object, adds it to this {1}s\n'.format(elem['element'], element))
output.write(' * {0} and returns the {1} object created. \n'.format(lotype, elem['element']))
output.write(' *\n')
output.write(' * @return a new {0} object instance\n'.format(elem['element']))
output.write(' *\n')
output.write(' * @see add{0}(const {0}*)\n'.format(strFunctions.cap(attrib['element'])))
output.write(' */\n')
output.write('{0}* \n'.format(elem['element']))
output.write('{0}::create{1}()\n'.format(element, strFunctions.cap(elem['name'])))
output.write('{\n')
output.write(' {0}* {1} = NULL;\n\n'.format(elem['element'], strFunctions.objAbbrev(elem['element'])))
output.write(' try\n')
output.write(' {\n')
output.write(' {0}_CREATE_NS({1}ns, getSBMLNamespaces());\n'.format(pkgName.upper(), pkgName.lower()))
output.write(
' {0} = new {1}({2}ns);\n'.format(strFunctions.objAbbrev(elem['element']), elem['element'], pkgName.lower()))
output.write(' delete {0}ns;\n'.format(pkgName.lower()))
output.write(' }\n')
output.write(' catch (...)\n')
output.write(' {\n')
output.write(' /* here we do not create a default object as the level/version must\n')
output.write(' * match the parent object\n')
output.write(' *\n')
output.write(' * do nothing\n')
output.write(' */\n')
output.write(' }\n\n')
output.write(' if({0} != NULL)\n'.format(strFunctions.objAbbrev(elem['element'])))
output.write(' {\n')
output.write(' m{0}.appendAndOwn({1});\n'.format(strFunctions.capp(attrib['name']), strFunctions.objAbbrev(elem['element'])))
output.write(' }\n\n')
output.write(' return {0};\n'.format(strFunctions.objAbbrev(elem['element'])))
output.write('}\n\n\n')
def writeGetFunction(attrib, output, element):
att = generalFunctions.parseAttributeForC(attrib)
attName = att[0]
capAttName = att[1]
attType = att[2]
if att[3] == 'const char *':
attTypeCode = 'const char *'
else:
attTypeCode = att[3]
num = att[4]
if attrib['type'] == 'lo_element' or attrib['type'] == 'inline_lo_element':
return
if attrib['type'] == 'array':
return
varname = strFunctions.objAbbrev(element)
if attrib['type'] == 'std::vector<double>':
return
elif attrib['type'] != 'element' and attrib['type'] != 'lo_element' and attrib['type'] != 'inline_lo_element' and attrib['type'] != 'XMLNode*':
output.write('LIBSBML_EXTERN\n')
output.write('{0}\n'.format(attTypeCode))
output.write('{0}_get{1}'.format(element, capAttName))
output.write('(const {0}_t * {1})\n'.format(element, varname))
output.write('{\n')
if attType == 'string':
output.write('\treturn ({0} != NULL && {0}->isSet{1}()) ? {0}->get{1}().c_str() : NULL;\n'.format(varname, capAttName))
# output.write('\tif ({0} == NULL)\n'.format(varname))
# output.write('\t\treturn NULL;\n\n')
# output.write('\treturn {0}->get{1}().empty() ? NULL : safe_strdup({0}->get{1}().c_str());\n'.format(varname, capAttName))
elif attType == 'boolean':
output.write('\treturn ({0} != NULL) ? static_cast<int>({0}->get{1}()) : 0;\n'.format(varname, capAttName))
elif num == True:
if attTypeCode == 'double':
output.write('\treturn ({0} != NULL) ? {0}->get{1}() : numeric_limits<double>::quiet_NaN();\n'.format(varname, capAttName))
else:
output.write('\treturn ({0} != NULL) ? {0}->get{1}() : SBML_INT_MAX;\n'.format(varname, capAttName))
elif attrib['type'] == 'array':
output.write('\treturn ({0} != NULL) ? {0}->get{1}() : NULL;\n'.format(varname, capAttName))
elif attrib['type'] == 'enum':
output.write('\treturn ({0} != NULL) ? {0}->get{1}() : {2}_UNKNOWN;\n'.format(varname, capAttName, attrib['element'].upper()))
output.write('}\n\n\n')
elif attrib['type'] == 'XMLNode*':
output.write('LIBSBML_EXTERN\n')
output.write('XMLNode_t*\n')
output.write('{0}_get{1}'.format(element, capAttName))
output.write('({0}_t * {1})\n'.format(element, varname))
output.write('{\n')
output.write('\tif ({0} == NULL)\n'.format(varname))
output.write('\t\treturn NULL;\n\n')
output.write('\treturn ({0}_t*){1}->get{2}();\n'.format('XMLNode',varname, capAttName))
output.write('}\n\n\n')
elif attrib['type'] == 'element':
if attrib['name'] == 'Math' or attrib['name'] == 'math':
output.write('LIBSBML_EXTERN\n')
output.write('const ASTNode_t*\n')
output.write('{0}_get{1}'.format(element, capAttName))
output.write('(const {0}_t * {1})\n'.format(element, varname))
output.write('{\n')
output.write('\tif ({0} == NULL)\n'.format(varname))
output.write('\t\treturn NULL;\n\n')
output.write('\treturn (ASTNode_t*)({0}->get{1}());\n'.format(varname, capAttName))
output.write('}\n\n\n')
else:
output.write('LIBSBML_EXTERN\n')
output.write('{0}_t*\n'.format(attrib['element']))
output.write('{0}_get{1}'.format(element, capAttName))
output.write('({0}_t * {1})\n'.format(element, varname))
output.write('{\n')
output.write('\tif ({0} == NULL)\n'.format(varname))
output.write('\t\treturn NULL;\n\n')
output.write('\treturn ({0}_t*){1}->get{2}();\n'.format(attrib['element'],varname, capAttName))
output.write('}\n\n\n')
if attrib.has_key('abstract') == False or (attrib.has_key('abstract') and attrib['abstract'] == False):
output.write('LIBSBML_EXTERN\n')
output.write('{0}_t*\n'.format(attrib['element']))
output.write('{0}_create{1}'.format(element, capAttName))
output.write('({0}_t * {1})\n'.format(element, varname))
output.write('{\n')
output.write('\tif ({0} == NULL)\n'.format(varname))
output.write('\t\treturn NULL;\n\n')
output.write('\treturn ({0}_t*){1}->create{2}();\n'.format(attrib['element'],varname, capAttName))
output.write('}\n\n\n')
elif attrib.has_key('concrete') and attrib.has_key('root'):
for elem in generalFunctions.getConcretes(attrib['root'], attrib['concrete']):
output.write('LIBSBML_EXTERN\n')
output.write('{0}_t *\n'.format(elem['element']))
output.write('{0}_create{1}({0}_t * {2})\n' .format(element, strFunctions.cap(elem['name']), strFunctions.objAbbrev(element)))
output.write('{\n')
output.write('\treturn ({0} != NULL) ? {0}->create{1}() : NULL;\n'.format(strFunctions.objAbbrev(element),strFunctions.cap(elem['name'])))
output.write('}\n\n')
def writeListOfSubElements(attrib, output, element):
loname = generalFunctions.getListOfClassName(attrib,strFunctions.cap(attrib['element']))
output.write('LIBSBML_EXTERN\n')
output.write('int\n')
output.write('{0}_add{1}({0}_t * {2}, '.format(element, strFunctions.cap(attrib['name']), strFunctions.objAbbrev(element)))
output.write('{0}_t * {1})\n'.format(attrib['element'], strFunctions.objAbbrev(attrib['element'])))
output.write('{\n')
output.write('\treturn ({0} != NULL) ? {0}->add{1}({2}) : LIBSBML_INVALID_OBJECT;\n'.format(strFunctions.objAbbrev(element),strFunctions.cap(attrib['name']),strFunctions.objAbbrev(attrib['element'])))
output.write('}\n\n')
if attrib.has_key('abstract') == False or (attrib.has_key('abstract') and attrib['abstract'] == False):
output.write('LIBSBML_EXTERN\n')
output.write('{0}_t *\n'.format(attrib['element']))
output.write('{0}_create{1}({0}_t * {2})\n' .format(element, strFunctions.cap(attrib['name']), strFunctions.objAbbrev(element)))
output.write('{\n')
output.write('\treturn ({0} != NULL) ? {0}->create{1}() : NULL;\n'.format(strFunctions.objAbbrev(element),strFunctions.cap(attrib['name'])))
output.write('}\n\n')
elif attrib.has_key('concrete') and attrib.has_key('root'):
for elem in generalFunctions.getConcretes(attrib['root'], attrib['concrete']):
output.write('LIBSBML_EXTERN\n')
output.write('{0}_t *\n'.format(elem['element']))
output.write('{0}_create{1}({0}_t * {2})\n' .format(element, strFunctions.cap(elem['name']), strFunctions.objAbbrev(element)))
output.write('{\n')
output.write('\treturn ({0} != NULL) ? {0}->create{1}() : NULL;\n'.format(strFunctions.objAbbrev(element),strFunctions.cap(elem['name'])))
output.write('}\n\n')
output.write('LIBSBML_EXTERN\n')
output.write('ListOf_t *\n')
output.write('{0}_get{1}({0}_t * {2})\n'.format(element, loname, strFunctions.objAbbrev(element)))
output.write('{\n')
output.write('\treturn ({0} != NULL) ? (ListOf_t *){0}->getListOf{1}() : NULL;\n'.format(strFunctions.objAbbrev(element),strFunctions.capp(attrib['name'])))
output.write('}\n\n')
output.write('LIBSBML_EXTERN\n')
output.write('{0}_t *\n'.format(attrib['element']))
output.write('{0}_get{1}({0}_t * {2}, '.format(element, strFunctions.cap(attrib['name']), strFunctions.objAbbrev(element)))
output.write('unsigned int n)\n')
output.write('{\n')
output.write('\treturn ({0} != NULL) ? {0}->get{1}(n) : NULL;\n'.format(strFunctions.objAbbrev(element),strFunctions.cap(attrib['name'])))
output.write('}\n\n')
output.write('LIBSBML_EXTERN\n')
output.write('{0}_t *\n'.format(attrib['element']))
output.write('{0}_get{1}ById({0}_t * {2}, '.format(element, strFunctions.cap(attrib['name']), strFunctions.objAbbrev(element)))
output.write('const char * sid)\n')
output.write('{\n')
output.write('\treturn ({0} != NULL) ? {0}->get{1}(sid) : NULL;\n'.format(strFunctions.objAbbrev(element),strFunctions.cap(attrib['name'])))
output.write('}\n\n')
output.write('LIBSBML_EXTERN\n')
output.write('unsigned int\n')
output.write('{0}_getNum{1}({0}_t * {2})\n' .format(element, strFunctions.capp(attrib['name']), strFunctions.objAbbrev(element)))
output.write('{\n')
output.write('\treturn ({0} != NULL) ? {0}->getNum{1}() : SBML_INT_MAX;\n'.format(strFunctions.objAbbrev(element),strFunctions.capp(attrib['name'])))
output.write('}\n\n')
output.write('LIBSBML_EXTERN\n')
output.write('{0}_t *\n'.format(attrib['element']))
output.write('{0}_remove{1}({0}_t * {2}, '.format(element, strFunctions.cap(attrib['name']), strFunctions.objAbbrev(element)))
output.write('unsigned int n)\n')
output.write('{\n')
output.write('\treturn ({0} != NULL) ? {0}->remove{1}(n) : NULL;\n'.format(strFunctions.objAbbrev(element),strFunctions.cap(attrib['name'])))
output.write('}\n\n')
output.write('LIBSBML_EXTERN\n')
output.write('{0}_t *\n'.format(attrib['element']))
output.write('{0}_remove{1}ById({0}_t * {2}, '.format(element, strFunctions.cap(attrib['name']), strFunctions.objAbbrev(element)))
output.write('const char * sid)\n')
output.write('{\n')
output.write('\treturn ({0} != NULL) ? {0}->remove{1}(sid) : NULL;\n'.format(strFunctions.objAbbrev(element),strFunctions.cap(attrib['name'])))
output.write('}\n\n')
def createCode(element, code):
type = element['name']
name = element['name']
if element.has_key('elementName'):
name = strFunctions.cap(element['elementName'])
if element.has_key('element'):
type = element['element']
listOf = generalFunctions.writeListOf(name)
writeConstructors(name, type, element['package'], code)
writeGetFunctions(code, name, type)
code.write('/**\n')
code.write(' * Adds a copy the given \"{0}\" to this {1}.\n'.format(type, listOf))
code.write(' *\n')
code.write(' * @param {0}; the {1} object to add\n'.format(strFunctions.objAbbrev(type), type))
code.write(' *\n')
code.write(' * @return integer value indicating success/failure of the\n')
code.write(' * function. @if clike The value is drawn from the\n')
code.write(' * enumeration #OperationReturnValues_t. @endif The possible values\n')
code.write(' * returned by this function are:\n')
code.write(' * @li LIBSEDML_OPERATION_SUCCESS\n')
code.write(' * @li LIBSEDML_INVALID_ATTRIBUTE_VALUE\n')
code.write(' */\n')
code.write('int\n')
code.write('{0}::add{1}(const {2}* {3})\n'.format(listOf, strFunctions.cap(name), type, strFunctions.objAbbrev(type)))
code.write('{\n')
code.write(' if({0} == NULL) return LIBSEDML_INVALID_ATTRIBUTE_VALUE;\n'.format(strFunctions.objAbbrev(type)))
code.write(' append({0});\n'.format(strFunctions.objAbbrev(type)))
code.write(' return LIBSEDML_OPERATION_SUCCESS;\n')
code.write('}\n\n\n')
code.write('/**\n')
code.write(' * Get the number of {0} objects in this {1}.\n'.format(type, listOf))
code.write(' *\n')
code.write(' * @return the number of {0} objects in this {1}\n'.format(type, listOf))
code.write(' */\n')
code.write('unsigned int\n')
code.write('{0}::getNum{1}s() const\n'.format(listOf, strFunctions.cap(name)))
code.write('{\n')
code.write(' return size();\n')
code.write('}\n\n')
if element.has_key('abstract') == False or (element.has_key('abstract') and element['abstract'] == False):
code.write('/**\n')
code.write(' * Creates a new {0} object, adds it to this {1}s\n'.format(type, listOf))
code.write(' * {0} and returns the {1} object created.\n'.format(element['name'], type))
code.write(' *\n')
code.write(' * @return a new {0} object instance\n'.format(type))
code.write(' *\n')
code.write(' * @see add{0}(const {0}* {1})\n'.format(type, strFunctions.objAbbrev(type)))
code.write(' */\n')
code.write('{0}*\n'.format(type))
code.write('{0}::create{1}()\n'.format(listOf, strFunctions.cap(name)))
code.write('{\n')
code.write(' {0} *temp = new {0}();\n'.format(type))
code.write(' if (temp != NULL) appendAndOwn(temp);\n')
code.write(' return temp;\n')
code.write('}\n\n')
elif element.has_key('concrete'):
for elem in element['concrete']:
code.write('/**\n')
code.write(' * Creates a new {0} object, adds it to this {1}\n'.format(elem['element'], listOf))
code.write(' * {0} and returns the {1} object created.\n'.format(elem['name'], elem['element']))
code.write(' *\n')
code.write(' * @return a new {0} object instance\n'.format(elem['element']))
code.write(' *\n')
code.write(' * @see add{0}(const {1}* {2})\n'.format(strFunctions.cap(elem['name']), type, strFunctions.objAbbrev(type)))
code.write(' */\n')
code.write('{0}*\n'.format(elem['element']))
code.write('{0}::create{1}()\n'.format(listOf, strFunctions.cap(elem['name'])))
code.write('{\n')
code.write(' {0} *temp = new {0}();\n'.format(elem['element']))
code.write(' if (temp != NULL) appendAndOwn(temp);\n')
code.write(' return temp;\n')
code.write('}\n\n')
writeRemoveFunctions(code, name, type)
generalFunctions.writeCommonCPPCode(code, element['name'], element['typecode'],None, True, False,False, element)
elementName = element['name']
if element.has_key('elementName'):
elementName = element['elementName']
writeProtectedFunctions(code, element['name'], element['package'], elementName, element)
def writeCreateObject(code, element, listOf, type, name, pkgName):
if element.has_key('abstract') == False or (element.has_key('abstract') and element['abstract'] == False):
code.write('/**\n')
code.write(' * Creates a new {0} object, adds it to this {1}\n'.format(type, listOf))
code.write(' * {0} and returns the {1} object created. \n'.format(element['name'], type))
code.write(' *\n')
code.write(' * @return a new {0} object instance\n'.format(type))
code.write(' *\n')
code.write(' * @see add{0}(const {0}* {1})\n'.format(type, strFunctions.objAbbrev(type)))
code.write(' */\n')
code.write('{0}* \n'.format(type))
code.write('{0}::create{1}()\n'.format(listOf, strFunctions.cap(name)))
code.write('{\n')
code.write(' {0}* {1} = NULL;\n\n'.format(type, strFunctions.objAbbrev(type)))
code.write(' try\n')
code.write(' {\n')
code.write(' {0}_CREATE_NS({1}ns, getSBMLNamespaces());\n'.format(pkgName.upper(), pkgName.lower()))
code.write(
' {0} = new {1}({2}ns);\n'.format(strFunctions.objAbbrev(type), type, pkgName.lower()))
code.write(' delete {0}ns;\n'.format(pkgName.lower()))
code.write(' }\n')
code.write(' catch (...)\n')
code.write(' {\n')
code.write(' /* here we do not create a default object as the level/version must\n')
code.write(' * match the parent object\n')
code.write(' *\n')
code.write(' * do nothing\n')
code.write(' */\n')
code.write(' }\n\n')
code.write(' if({0} != NULL)\n'.format(strFunctions.objAbbrev(type)))
code.write(' {\n')
code.write(' appendAndOwn({0});\n'.format(strFunctions.objAbbrev(type)))
code.write(' }\n\n')
code.write(' return {0};\n'.format(strFunctions.objAbbrev(type)))
code.write('}\n\n')
elif element.has_key('concrete'):
for elem in generalFunctions.getConcretes(element['root'], element['concrete']):
code.write('/**\n')
code.write(' * Creates a new {0} object, adds it to this {1}\n'.format(elem['element'], listOf))
code.write(' * {0} and returns the {1} object created. \n'.format(elem['name'], elem['element']))
code.write(' *\n')
code.write(' * @return a new {0} object instance\n'.format(elem['element']))
code.write(' *\n')
code.write(' * @see add{0}(const {1}* {2})\n'.format(strFunctions.cap(elem['name']), type, strFunctions.objAbbrev(type)))
code.write(' */\n')
code.write('{0}* \n'.format(elem['element']))
code.write('{0}::create{1}()\n'.format(listOf, strFunctions.cap(elem['name'])))
code.write('{\n')
code.write(' {0}* {1} = NULL;\n\n'.format(elem['element'], strFunctions.objAbbrev(elem['element'])))
code.write(' try\n')
code.write(' {\n')
code.write(' {0}_CREATE_NS({1}ns, getSBMLNamespaces());\n'.format(pkgName.upper(), pkgName.lower()))
code.write(
' {0} = new {1}({2}ns);\n'.format(strFunctions.objAbbrev(elem['element']), elem['element'], pkgName.lower()))
code.write(' delete {0}ns;\n'.format(pkgName.lower()))
code.write(' }\n')
code.write(' catch (...)\n')
code.write(' {\n')
code.write(' /* here we do not create a default object as the level/version must\n')
code.write(' * match the parent object\n')
code.write(' *\n')
code.write(' * do nothing\n')
code.write(' */\n')
code.write(' }\n\n')
code.write(' if({0} != NULL)\n'.format(strFunctions.objAbbrev(elem['element'])))
code.write(' {\n')
code.write(' appendAndOwn({0});\n'.format(strFunctions.objAbbrev(elem['element'])))
code.write(' }\n\n')
code.write(' return {0};\n'.format(strFunctions.objAbbrev(elem['element'])))
code.write('}\n\n')
def writeListOfSubFunctions(attrib, output, element):
loname = generalFunctions.writeListOf(strFunctions.cap(attrib['name']))
att = generalFunctions.parseAttribute(attrib)
attName = att[0]
capAttName = att[1]
attType = att[2]
attTypeCode = att[3]
num = att[4]
output.write('/*\n')
output.write(' * Returns the \"{0}\"'.format(loname))
output.write(' in this {0} object.\n'.format(element))
output.write(' */\n')
output.write('const {0}*\n'.format(loname))
output.write('{0}::getListOf{1}s() const\n'.format(element, strFunctions.cap(attrib['name'])))
output.write('{\n')
output.write('\treturn &m{0};\n'.format(strFunctions.capp(attName)))
output.write('}\n\n\n')
writeListOfCode.writeRemoveFunctions(output, strFunctions.cap(attrib['name']), attrib['element'], True, element, capAttName)
writeListOfCode.writeGetFunctions(output, strFunctions.cap(attrib['name']), attrib['element'], True, element, capAttName)
output.write('/**\n')
output.write(' * Adds a copy the given \"{0}\" to this {1}.\n'.format(attrib['element'], element))
output.write(' *\n')
output.write(' * @param {0}; the {1} object to add\n'.format(strFunctions.objAbbrev(attrib['element']), attrib['element']))
output.write(' *\n')
output.write(' * @return integer value indicating success/failure of the\n')
output.write(' * function. @if clike The value is drawn from the\n')
output.write(' * enumeration #OperationReturnValues_t. @endif The possible values\n')
output.write(' * returned by this function are:\n')
output.write(' * @li LIBSEDML_OPERATION_SUCCESS\n')
output.write(' * @li LIBSEDML_INVALID_ATTRIBUTE_VALUE\n')
output.write(' */\n')
output.write('int\n')
output.write('{0}::add{1}(const {2}* {3})\n'.format(element, strFunctions.cap(attrib['name']), attrib['element'], strFunctions.objAbbrev(attrib['element'])))
output.write('{\n')
output.write('\tif({0} == NULL) return LIBSEDML_INVALID_ATTRIBUTE_VALUE;\n'.format(strFunctions.objAbbrev(attrib['element'])))
output.write('\tm{0}.append({1});\n'.format(strFunctions.capp(attrib['name']),strFunctions.objAbbrev(attrib['element'])))
output.write('\treturn LIBSEDML_OPERATION_SUCCESS;\n')
output.write('}\n\n\n')
output.write('/**\n')
output.write(' * Get the number of {0} objects in this {1}.\n'.format(attrib['element'], element))
output.write(' *\n')
output.write(' * @return the number of {0} objects in this {1}\n'.format(attrib['element'], element))
output.write(' */\n')
output.write('unsigned int \n')
output.write('{0}::getNum{1}s() const\n'.format(element, strFunctions.cap(attrib['name'])))
output.write('{\n')
output.write('\treturn m{0}.size();\n'.format(strFunctions.capp(attrib['name'])))
output.write('}\n\n')
if attrib.has_key('abstract') == False or (attrib.has_key('abstract') and attrib['abstract'] == False):
output.write('/**\n')
output.write(' * Creates a new {0} object, adds it to this {1}s\n'.format(attrib['element'], element))
output.write(' * {0} and returns the {1} object created. \n'.format(element, attrib['element']))
output.write(' *\n')
output.write(' * @return a new {0} object instance\n'.format(attrib['element']))
output.write(' *\n')
output.write(' * @see add{0}(const {0}* {1})\n'.format(attrib['element'], strFunctions.objAbbrev(attrib['element'])))
output.write(' */\n')
output.write('{0}* \n'.format(attrib['element']))
output.write('{0}::create{1}()\n'.format(element, strFunctions.cap(attrib['name'])))
output.write('{\n')
output.write('\t{0} *temp = new {0}();\n'.format(attrib['element']))
output.write('\tif (temp != NULL) m{0}.appendAndOwn(temp);\n'.format(strFunctions.capp(attrib['name'])))
output.write('\treturn temp;\n')
output.write('}\n\n')
elif attrib.has_key('concrete'):
for elem in attrib['concrete']:
output.write('/**\n')
output.write(' * Creates a new {0} object, adds it to this {1}s\n'.format(elem['element'], element))
output.write(' * {0} and returns the {1} object created. \n'.format(element, elem['element']))
output.write(' *\n')
output.write(' * @return a new {0} object instance\n'.format(elem['element']))
output.write(' *\n')
output.write(' * @see add{0}(const {1}* {2})\n'.format(strFunctions.cap(elem['name']), attrib['element'], strFunctions.objAbbrev(attrib['element'])))
output.write(' */\n')
output.write('{0}* \n'.format(elem['element']))
output.write('{0}::create{1}()\n'.format(element, strFunctions.cap(elem['name'])))
output.write('{\n')
output.write('\t{0} *temp = new {0}();\n'.format(elem['element']))
output.write('\tif (temp != NULL) m{0}.appendAndOwn(temp);\n'.format(strFunctions.capp(attrib['name'])))
output.write('\treturn temp;\n')
output.write('}\n\n')
def writeHasReqdElementsFunction(output, element):
output.write('LIBSEDML_EXTERN\n')
output.write('int\n')
output.write('{0}_hasRequiredElements'.format(element))
output.write('({0}_t * {1});\n\n\n'.format(element, strFunctions.objAbbrev(element)))
def writeClass(header, nameOfElement, typeOfElement, nameOfPackage,
elementDict):
listOf = generalFunctions.getListOfClassName(elementDict, typeOfElement)
header.write('class LIBSBML_EXTERN {0} :'.format(listOf))
header.write(' public ListOf\n{0}\n\n'.format('{'))
header.write('public:\n\n')
writeConstructors(nameOfElement, typeOfElement, nameOfPackage, header,
elementDict)
writeGetFunctions(header, nameOfElement, typeOfElement, False, "",
elementDict)
header.write('\t/**\n')
header.write('\t * Adds a copy the given \"{0}\" to this {1}.\n'.format(
nameOfElement, listOf))
header.write('\t *\n')
header.write('\t * @param {0}; the {1} object to add\n'.format(
strFunctions.objAbbrev(nameOfElement), nameOfElement))
header.write('\t *\n')
header.write(
'\t * @return integer value indicating success/failure of the\n')
header.write('\t * function. @if clike The value is drawn from the\n')
header.write(
'\t * enumeration #OperationReturnValues_t. @endif The possible values\n'
)
header.write('\t * returned by this function are:\n')
header.write('\t * @li LIBSEDML_OPERATION_SUCCESS\n')
header.write('\t * @li LIBSEDML_INVALID_ATTRIBUTE_VALUE\n')
header.write('\t */\n')
header.write('\tint add{0}(const {1}* {2});\n\n\n'.format(
nameOfElement, typeOfElement, strFunctions.objAbbrev(nameOfElement)))
header.write('\t/**\n')
header.write('\t * Get the number of {0} objects in this {1}.\n'.format(
nameOfElement, listOf))
header.write('\t *\n')
header.write('\t * @return the number of {0} objects in this {1}\n'.format(
nameOfElement, listOf))
header.write('\t */\n')
header.write('\tunsigned int getNum{0}() const;\n\n\n'.format(
strFunctions.capp(nameOfElement)))
if elementDict.has_key('abstract') == False or (
elementDict.has_key('abstract')
and elementDict['abstract'] == False):
header.write('\t/**\n')
header.write('\t * Creates a new {0} object, adds it to the\n'.format(
nameOfElement))
header.write('\t * {0} and returns the {1} object created. \n'.format(
listOf, nameOfElement))
header.write('\t *\n')
header.write(
'\t * @return a new {0} object instance\n'.format(nameOfElement))
header.write('\t *\n')
header.write('\t * @see add{0}(const {1}* {2})\n'.format(
nameOfElement, typeOfElement,
strFunctions.objAbbrev(nameOfElement)))
header.write('\t */\n')
header.write('\t{0}* create{1}();\n\n\n'.format(
typeOfElement, nameOfElement))
elif elementDict.has_key('concrete'):
for elem in generalFunctions.getConcretes(elementDict['root'],
elementDict['concrete']):
header.write('\t/**\n')
header.write(
'\t * Creates a new {0} object, adds it to the\n'.format(
nameOfElement))
header.write(
'\t * {0} and returns the {1} object created. \n'.format(
listOf, nameOfElement))
header.write('\t *\n')
header.write('\t * @return a new {0} object instance\n'.format(
nameOfElement))
header.write('\t *\n')
header.write('\t * @see add{0}(const {1}* {2})\n'.format(
nameOfElement, typeOfElement,
strFunctions.objAbbrev(nameOfElement)))
header.write('\t */\n')
header.write('\t{0}* create{1}();\n\n\n'.format(
elem['element'], strFunctions.cap(elem['name'])))
writeRemoveFunctions(header, nameOfElement, typeOfElement, False, "",
elementDict)
generalFunctions.writeCommonHeaders(header, typeOfElement, None, True,
False, False, elementDict)
header.write('protected:\n\n')
writeProtectedFunctions(header, nameOfElement, nameOfPackage, elementDict)
if elementDict.has_key('concrete'):
header.write('\tvirtual bool isValidTypeForList(SBase * item) {\n')
header.write('\t\tint code = item->getTypeCode();\n')
header.write('\t\treturn code == getItemTypeCode() ')
for elem in generalFunctions.getConcretes(elementDict['root'],
elementDict['concrete']):
typecode = 'SBML_{0}_{1}'.format(nameOfPackage.upper(),
elem['element'].upper())
if elem.has_key('root'):
concrete = generalFunctions.getElement(elem['root'],
elem['element'])
if (concrete != None):
typecode = concrete['typecode']
header.write('|| code == {0} '.format(typecode))
header.write(';\n')
header.write('\t}\n\n\n')
friends = getInlineListOfClasses(elementDict, typeOfElement)
for friend in friends:
header.write('\tfriend class {0};\n'.format(friend))
header.write('\n};\n\n')
def writeSetFunction(attrib, output, element):
att = generalFunctions.parseAttributeForC(attrib)
attName = att[0]
capAttName = att[1]
attType = att[2]
attTypeCode = att[3]
num = att[4]
if (
attrib["type"] != "element"
and attrib["type"] != "lo_element"
and attrib["type"] != "XMLNode*"
and attrib["type"] != "inline_lo_element"
):
output.write("/**\n")
output.write(' * Sets the "{0}" attribute of the given {1}_t structure.\n *\n'.format(attName, element))
if attType == "string":
output.write(" * This function copies the string given in @p string. If the string is\n")
output.write(
" * a null pointer, this function performs {0}_unset{1}() instead.\n *\n".format(element, capAttName)
)
output.write(" * @param {0} the {1}_t structure.\n *\n".format(strFunctions.objAbbrev(element), element))
output.write(
' * @param {0} the string to which the structures "{1}" attribute should be\n'.format(
strFunctions.cleanStr(attName), attName
)
)
output.write(" * set.\n *\n")
output.write(" * @return integer value indicating success/failure of the\n")
output.write(" * function. @if clike The value is drawn from the\n")
output.write(" * enumeration #OperationReturnValues_t. @endif@~ The possible values\n")
output.write(" * returned by this function are:\n")
output.write(
" * @li @link OperationReturnValues_t#LIBSBML_OPERATION_SUCCESS LIBSBML_OPERATION_SUCCESS@endlink\n"
)
output.write(
" * @li @link OperationReturnValues_t#LIBSBML_INVALID_ATTRIBUTE_VALUE LIBSBML_INVALID_ATTRIBUTE_VALUE@endlink\n"
)
output.write(" * @li @link OperationReturnValues_t#LIBSBML_INVALID_OBJECT LIBSBML_INVALID_OBJECT@endlink\n *\n")
if attType == "string":
output.write(" * @note Using this function with a null pointer for @p name is equivalent to\n")
output.write(' * unsetting the value of the "name" attribute.\n * \n')
output.write(" * @member of {0}_t\n".format(element))
output.write(" */\n")
output.write("LIBSBML_EXTERN\n")
output.write("int\n")
output.write("{0}_set{1}".format(element, capAttName))
output.write("({0}_t * {1},".format(element, strFunctions.objAbbrev(element)))
output.write(" {0} {1});\n\n\n".format(attTypeCode, strFunctions.cleanStr(attName)))
elif attrib["type"] == "XMLNode*":
output.write("LIBSBML_EXTERN\n")
output.write("int\n")
output.write("{0}_set{1}".format(element, capAttName))
output.write("({0}_t * {1},".format(element, strFunctions.objAbbrev(element)))
output.write(" XMLNode_t* {0});\n\n\n".format(strFunctions.cleanStr(attName)))
elif attrib["type"] == "element":
if attrib["name"] == "Math" or attrib["name"] == "math":
output.write("/**\n")
output.write(" * Sets the mathematical expression of the given {0}_t structure.\n *\n".format(element))
output.write(" * @param {0} the {1}_t structure.\n *\n".format(strFunctions.objAbbrev(element), element))
output.write(' * @param math an ASTNode_t structure to be assigned as the "math"\n')
output.write(" * subelement of this {0}_t.\n *\n".format(element))
output.write(" * @return integer value indicating success/failure of the\n")
output.write(" * function. @if clike The value is drawn from the\n")
output.write(" * enumeration #OperationReturnValues_t. @endif@~ The possible values\n")
output.write(" * returned by this function are:\n")
output.write(
" * @li @link OperationReturnValues_t#LIBSBML_OPERATION_SUCCESS LIBSBML_OPERATION_SUCCESS@endlink\n"
)
output.write(
" * @li @link OperationReturnValues_t#LIBSBML_INVALID_OBJECT LIBSBML_INVALID_OBJECT@endlink\n *\n"
)
output.write(" * @member of {0}_t\n".format(element))
output.write(" */\n")
output.write("LIBSBML_EXTERN\n")
output.write("int\n")
output.write("{0}_setMath".format(element))
output.write("({0}_t * {1},".format(element, strFunctions.objAbbrev(element)))
output.write(" const ASTNode_t* {0});\n\n\n".format(strFunctions.cleanStr(attName)))
else:
output.write("LIBSBML_EXTERN\n")
output.write("int\n")
output.write("{0}_set{1}".format(element, capAttName))
output.write("({0}_t * {1},".format(element, strFunctions.objAbbrev(element)))
output.write(" {0}_t* {1});\n\n\n".format(attrib["element"], strFunctions.cleanStr(attName)))
def writeClass(header, nameOfElement, typeOfElement, nameOfPackage, elementDict):
listOf = generalFunctions.getListOfClassName(elementDict, typeOfElement)
header.write('class LIBSBML_EXTERN {0} :'.format(listOf))
header.write(' public ListOf\n{0}\n\n'.format('{'))
header.write('public:\n\n')
writeConstructors(nameOfElement, typeOfElement, nameOfPackage, header,elementDict)
writeGetFunctions(header, nameOfElement, typeOfElement, False, "", elementDict)
header.write('\t/**\n')
header.write('\t * Adds a copy the given \"{0}\" to this {1}.\n'.format(nameOfElement, listOf))
header.write('\t *\n')
header.write('\t * @param {0}; the {1} object to add\n'.format(strFunctions.objAbbrev(nameOfElement), nameOfElement))
header.write('\t *\n')
header.write('\t * @return integer value indicating success/failure of the\n')
header.write('\t * function. @if clike The value is drawn from the\n')
header.write('\t * enumeration #OperationReturnValues_t. @endif The possible values\n')
header.write('\t * returned by this function are:\n')
header.write('\t * @li LIBSEDML_OPERATION_SUCCESS\n')
header.write('\t * @li LIBSEDML_INVALID_ATTRIBUTE_VALUE\n')
header.write('\t */\n')
header.write('\tint add{0}(const {1}* {2});\n\n\n'.format(nameOfElement, typeOfElement, strFunctions.objAbbrev(nameOfElement)))
header.write('\t/**\n')
header.write('\t * Get the number of {0} objects in this {1}.\n'.format(nameOfElement, listOf))
header.write('\t *\n')
header.write('\t * @return the number of {0} objects in this {1}\n'.format(nameOfElement, listOf))
header.write('\t */\n')
header.write('\tunsigned int getNum{0}() const;\n\n\n'.format(strFunctions.capp(nameOfElement)))
if elementDict.has_key('abstract') == False or (elementDict.has_key('abstract') and elementDict['abstract'] == False):
header.write('\t/**\n')
header.write('\t * Creates a new {0} object, adds it to the\n'.format(nameOfElement))
header.write('\t * {0} and returns the {1} object created. \n'.format(listOf, nameOfElement))
header.write('\t *\n')
header.write('\t * @return a new {0} object instance\n'.format(nameOfElement))
header.write('\t *\n')
header.write('\t * @see add{0}(const {1}* {2})\n'.format(nameOfElement, typeOfElement, strFunctions.objAbbrev(nameOfElement)))
header.write('\t */\n')
header.write('\t{0}* create{1}();\n\n\n'.format(typeOfElement, nameOfElement))
elif elementDict.has_key('concrete'):
for elem in generalFunctions.getConcretes(elementDict['root'], elementDict['concrete']):
header.write('\t/**\n')
header.write('\t * Creates a new {0} object, adds it to the\n'.format(nameOfElement))
header.write('\t * {0} and returns the {1} object created. \n'.format(listOf, nameOfElement))
header.write('\t *\n')
header.write('\t * @return a new {0} object instance\n'.format(nameOfElement))
header.write('\t *\n')
header.write('\t * @see add{0}(const {1}* {2})\n'.format(nameOfElement, typeOfElement, strFunctions.objAbbrev(nameOfElement)))
header.write('\t */\n')
header.write('\t{0}* create{1}();\n\n\n'.format(elem['element'], strFunctions.cap(elem['name'])))
writeRemoveFunctions(header, nameOfElement, typeOfElement, False, "", elementDict)
generalFunctions.writeCommonHeaders(header, typeOfElement, None, True, False, False, elementDict)
header.write('protected:\n\n')
writeProtectedFunctions(header, nameOfElement, nameOfPackage, elementDict)
if elementDict.has_key('concrete'):
header.write('\tvirtual bool isValidTypeForList(SBase * item) {\n')
header.write('\t\tint code = item->getTypeCode();\n')
header.write('\t\treturn code == getItemTypeCode() ')
for elem in generalFunctions.getConcretes(elementDict['root'], elementDict['concrete']):
typecode = 'SBML_{0}_{1}'.format(nameOfPackage.upper(),elem['element'].upper())
if elem.has_key('root'):
concrete = generalFunctions.getElement(elem['root'], elem['element'])
if (concrete != None):
typecode = concrete['typecode']
header.write('|| code == {0} '.format(typecode))
header.write(';\n')
header.write('\t}\n\n\n');
friends = getInlineListOfClasses(elementDict, typeOfElement)
for friend in friends:
header.write('\tfriend class {0};\n'.format(friend))
header.write('\n};\n\n')
def writeGetFunction(attrib, output, element):
att = generalFunctions.parseAttributeForC(attrib)
attName = att[0]
capAttName = att[1]
attType = att[2]
if att[3] == "const char *":
attTypeCode = "const char *"
else:
attTypeCode = att[3]
num = att[4]
type = attrib["type"]
if type != "element" and type != "lo_element" and type != "XMLNode*" and type != "inline_lo_element":
output.write("/**\n")
output.write(' * Returns the value of the "{0}" attribute of the given {1}_t\n'.format(attName, element))
output.write(" * structure.\n *\n")
output.write(" * @param {0} the {1}_t structure.\n *\n".format(strFunctions.objAbbrev(element), element))
output.write(" * @return the {0} of this structure.\n *\n".format(attName))
output.write(" * @member of {0}_t\n".format(element))
output.write(" */\n")
output.write("LIBSBML_EXTERN\n")
output.write("{0}\n".format(attTypeCode))
output.write("{0}_get{1}".format(element, capAttName))
output.write("(const {0}_t * {1});\n\n\n".format(element, strFunctions.objAbbrev(element)))
elif type == "XMLNode*":
output.write("LIBSBML_EXTERN\n")
output.write("XMLNode_t*\n")
output.write("{0}_get{1}".format(element, capAttName))
output.write("({0}_t * {1});\n\n\n".format(element, strFunctions.objAbbrev(element)))
elif type == "element":
if attrib["name"] == "Math" or attrib["name"] == "math":
output.write("/**\n")
output.write(" * Gets the mathematical expression of this {0}_t structure as an\n".format(element))
output.write(" * ASTNode_t structure.\n *\n")
output.write(" * @param {0} the {1}_t structure.\n *\n".format(strFunctions.objAbbrev(element), element))
output.write(" * @return the math for this {0}_t, as an ASTNode_t.\n *\n".format(element))
output.write(" * @member of {0}_t\n".format(element))
output.write(" */\n")
output.write("LIBSBML_EXTERN\n")
output.write("const ASTNode_t*\n")
output.write("{0}_getMath".format(element))
output.write("(const {0}_t * {1});\n\n\n".format(element, strFunctions.objAbbrev(element)))
else:
output.write("LIBSBML_EXTERN\n")
output.write("{0}_t*\n".format(strFunctions.cap(attrib["element"])))
output.write("{0}_get{1}".format(element, capAttName))
output.write("({0}_t * {1});\n\n\n".format(element, strFunctions.objAbbrev(element)))
if attrib.has_key("abstract") == False or (attrib.has_key("abstract") and attrib["abstract"] == False):
output.write("LIBSBML_EXTERN\n")
output.write("{0}_t*\n".format(strFunctions.cap(attrib["element"])))
output.write("{0}_create{1}".format(element, capAttName))
output.write("({0}_t * {1});\n\n\n".format(element, strFunctions.objAbbrev(element)))
else:
for elem in generalFunctions.getConcretes(attrib["root"], attrib["concrete"]):
output.write("LIBSBML_EXTERN\n")
output.write("{0}_t *\n".format(elem["element"]))
output.write(
"{0}_create{1}({0}_t * {2}".format(
element, strFunctions.cap(elem["name"]), strFunctions.objAbbrev(element)
)
)
output.write(");\n\n\n")
def writeLOFunctions(fileOut, object, nameOfClass, pkg):
ob = strFunctions.objAbbrev(object)
fileOut.write('/*\n')
fileOut.write(' * Returns the ListOf{0}s in this plugin object.\n'.format(object))
fileOut.write(' */\n')
fileOut.write('const ListOf{0}s* \n'.format(object))
fileOut.write('{0}::getListOf{1}s () const\n'.format(nameOfClass, object))
fileOut.write('{\n')
fileOut.write(' return &this->m{0}s;\n'.format(object))
fileOut.write('}\n\n\n')
fileOut.write('/*\n')
fileOut.write(' * Returns the ListOf{0}s in this plugin object.\n'.format(object))
fileOut.write(' */\n')
fileOut.write('ListOf{0}s* \n'.format(object))
fileOut.write('{0}::getListOf{1}s ()\n'.format(nameOfClass, object))
fileOut.write('{\n')
fileOut.write(' return &this->m{0}s;\n'.format(object))
fileOut.write('}\n\n\n')
fileOut.write('/*\n')
fileOut.write(' * Returns the {0} object that belongs to the given index.\n'.format(object))
fileOut.write(' */\n')
fileOut.write('const {0}*\n'.format(object))
fileOut.write('{0}::get{1}(unsigned int n) const\n'.format(nameOfClass, object))
fileOut.write('{\n')
fileOut.write(' return static_cast<const {0}*>(m{0}s.get(n));\n'.format(object))
fileOut.write('}\n\n\n')
fileOut.write('/*\n')
fileOut.write(' * Returns the {0} object that belongs to the given index.\n'.format(object))
fileOut.write(' */\n')
fileOut.write('{0}*\n'.format(object))
fileOut.write('{0}::get{1}(unsigned int n)\n'.format(nameOfClass, object))
fileOut.write('{\n')
fileOut.write(' return static_cast<{0}*>(m{0}s.get(n));\n'.format(object))
fileOut.write('}\n\n\n')
fileOut.write('/*\n')
fileOut.write(' * Returns the {0} object based on its identifier.\n'.format(object))
fileOut.write(' */\n')
fileOut.write('const {0}*\n'.format(object))
fileOut.write('{0}::get{1}(const std::string& sid) const\n'.format(nameOfClass, object))
fileOut.write('{\n')
fileOut.write(' return static_cast<const {0}*>(m{0}s.get(sid));\n'.format(object))
fileOut.write('}\n\n\n')
fileOut.write('/*\n')
fileOut.write(' * Returns the {0} object based on its identifier.\n'.format(object))
fileOut.write(' */\n')
fileOut.write('{0}*\n'.format(object))
fileOut.write('{0}::get{1}(const std::string& sid)\n'.format(nameOfClass, object))
fileOut.write('{\n')
fileOut.write(' return static_cast<{0}*>(m{0}s.get(sid));\n'.format(object))
fileOut.write('}\n\n\n')
fileOut.write('/*\n')
fileOut.write(' * Adds a copy of the given {0} to the ListOf{0}s in this plugin object.\n'.format(object))
fileOut.write(' */\n')
fileOut.write('int\n')
fileOut.write('{2}::add{0} (const {0}* {1})\n'.format(object, strFunctions.lowerFirst(object), nameOfClass))
fileOut.write('{\n')
fileOut.write(' if ({0} == NULL)\n'.format(strFunctions.lowerFirst(object)))
fileOut.write(' {\n')
fileOut.write(' return LIBSBML_OPERATION_FAILED;\n')
fileOut.write(' }\n')
fileOut.write(' else if ({0}->hasRequiredElements() == false)\n'.format(strFunctions.lowerFirst(object)))
fileOut.write(' {\n')
fileOut.write(' return LIBSBML_INVALID_OBJECT;\n')
fileOut.write(' }\n')
fileOut.write(' else if (getLevel() != {0}->getLevel())\n'.format(strFunctions.lowerFirst(object)))
fileOut.write(' {\n')
fileOut.write(' return LIBSBML_LEVEL_MISMATCH;\n')
fileOut.write(' }\n')
fileOut.write(' else if (getVersion() != {0}->getVersion())\n'.format(strFunctions.lowerFirst(object)))
fileOut.write(' {\n')
fileOut.write(' return LIBSBML_VERSION_MISMATCH;\n')
fileOut.write(' }\n')
fileOut.write(' else if (getPackageVersion() != {0}->getPackageVersion())\n'.format(strFunctions.lowerFirst(object)))
fileOut.write(' {\n')
fileOut.write(' return LIBSBML_PKG_VERSION_MISMATCH;\n')
fileOut.write(' }\n')
fileOut.write(' else\n')
fileOut.write(' {\n')
fileOut.write(' m{0}s.append({1});\n'.format(object, strFunctions.lowerFirst(object)))
fileOut.write(' }\n\n')
fileOut.write(' return LIBSBML_OPERATION_SUCCESS;\n\n')
fileOut.write('}\n\n\n')
fileOut.write('/*\n')
fileOut.write(' * Creates a new {0} object and adds it to the ListOf{0}s in this plugin object.\n'.format(object))
fileOut.write(' */\n')
fileOut.write('{0}* \n'.format(object))
fileOut.write('{1}::create{0} ()\n'.format(object, nameOfClass))
fileOut.write('{\n')
fileOut.write(' {0}* {1} = NULL;\n\n'.format(object, ob))
fileOut.write(' try\n')
fileOut.write(' {\n')
fileOut.write(' {0}_CREATE_NS({1}ns, getSBMLNamespaces());\n'.format(pkg.upper(), pkg.lower()))
fileOut.write(' {0} = new {1}({2}ns);\n'.format(ob, object, pkg.lower()))
fileOut.write(' delete {0}ns;\n'.format(pkg.lower()))
fileOut.write(' }\n')
fileOut.write(' catch(...)\n')
fileOut.write(' {\n')
fileOut.write(' }\n\n')
fileOut.write(' if ({0} != NULL)\n'.format(ob))
fileOut.write(' {\n')
fileOut.write(' m{0}s.appendAndOwn({1});\n'.format(object, ob))
fileOut.write(' }\n\n')
fileOut.write(' return {0};\n'.format(ob))
fileOut.write('}\n\n\n')
fileOut.write('/*\n')
fileOut.write(' * Removes the nth {0} object from this plugin object\n'.format(object))
fileOut.write(' */\n')
fileOut.write('{0}* \n'.format(object))
fileOut.write('{1}::remove{0}(unsigned int n)\n'.format(object, nameOfClass))
fileOut.write('{\n')
fileOut.write(' return static_cast<{0}*>(m{0}s.remove(n));\n'.format(object))
fileOut.write('}\n\n\n')
fileOut.write('/*\n')
fileOut.write(' * Removes the {0} object with the given id from this plugin object\n'.format(object))
fileOut.write(' */\n')
fileOut.write('{0}* \n'.format(object))
fileOut.write('{1}::remove{0}(const std::string& sid)\n'.format(object, nameOfClass))
fileOut.write('{\n')
fileOut.write(' return static_cast<{0}*>(m{0}s.remove(sid));\n'.format(object))
fileOut.write('}\n\n\n')
fileOut.write('/*\n')
fileOut.write(' * Returns the number of {0} objects in this plugin object.\n'.format(object))
fileOut.write(' */\n')
fileOut.write('unsigned int \n')
fileOut.write('{1}::getNum{0}s () const\n'.format(object, nameOfClass))
fileOut.write('{\n')
fileOut.write(' return m{0}s.size();\n'.format(object))
fileOut.write('}\n\n\n')
def writeListOfSubFunctions(attrib, output, element):
loname = generalFunctions.writeListOf(strFunctions.cap(attrib['name']))
att = generalFunctions.parseAttribute(attrib)
attName = att[0]
capAttName = att[1]
attType = att[2]
attTypeCode = att[3]
num = att[4]
output.write('/*\n')
output.write(' * Returns the \"{0}\"'.format(loname))
output.write(' in this {0} object.\n'.format(element))
output.write(' */\n')
output.write('const {0}*\n'.format(loname))
output.write('{0}::getListOf{1}s() const\n'.format(
element, strFunctions.cap(attrib['name'])))
output.write('{\n')
output.write('\treturn &m{0};\n'.format(capAttName))
output.write('}\n\n\n')
writeListOfCode.writeRemoveFunctions(output,
strFunctions.cap(attrib['name']),
attrib['element'], True, element,
capAttName)
writeListOfCode.writeGetFunctions(output, strFunctions.cap(attrib['name']),
attrib['element'], True, element,
capAttName)
output.write('/**\n')
output.write(' * Adds a copy the given \"{0}\" to this {1}.\n'.format(
attrib['element'], element))
output.write(' *\n')
output.write(' * @param {0}; the {1} object to add\n'.format(
strFunctions.objAbbrev(attrib['element']), attrib['element']))
output.write(' *\n')
output.write(
' * @return integer value indicating success/failure of the\n')
output.write(' * function. @if clike The value is drawn from the\n')
output.write(
' * enumeration #OperationReturnValues_t. @endif The possible values\n'
)
output.write(' * returned by this function are:\n')
output.write(' * @li LIBSEDML_OPERATION_SUCCESS\n')
output.write(' * @li LIBSEDML_INVALID_ATTRIBUTE_VALUE\n')
output.write(' */\n')
output.write('int\n')
output.write('{0}::add{1}(const {2}* {3})\n'.format(
element, strFunctions.cap(attrib['name']), attrib['element'],
strFunctions.objAbbrev(attrib['element'])))
output.write('{\n')
output.write(
'\tif({0} == NULL) return LIBSEDML_INVALID_ATTRIBUTE_VALUE;\n'.format(
strFunctions.objAbbrev(attrib['element'])))
output.write('\tm{0}.append({1});\n'.format(
strFunctions.cap(attrib['name']),
strFunctions.objAbbrev(attrib['element'])))
output.write('\treturn LIBSEDML_OPERATION_SUCCESS;\n')
output.write('}\n\n\n')
output.write('/**\n')
output.write(' * Get the number of {0} objects in this {1}.\n'.format(
attrib['element'], element))
output.write(' *\n')
output.write(' * @return the number of {0} objects in this {1}\n'.format(
attrib['element'], element))
output.write(' */\n')
output.write('unsigned int \n')
output.write('{0}::getNum{1}s() const\n'.format(
element, strFunctions.cap(attrib['name'])))
output.write('{\n')
output.write('\treturn m{0}.size();\n'.format(
strFunctions.cap(attrib['name'])))
output.write('}\n\n')
if attrib.has_key('abstract') == False or (attrib.has_key('abstract') and
attrib['abstract'] == False):
output.write('/**\n')
output.write(
' * Creates a new {0} object, adds it to this {1}s\n'.format(
attrib['element'], element))
output.write(' * {0} and returns the {1} object created. \n'.format(
element, attrib['element']))
output.write(' *\n')
output.write(' * @return a new {0} object instance\n'.format(
attrib['element']))
output.write(' *\n')
output.write(' * @see add{0}(const {0}* {1})\n'.format(
attrib['element'], strFunctions.objAbbrev(attrib['element'])))
output.write(' */\n')
output.write('{0}* \n'.format(attrib['element']))
output.write('{0}::create{1}()\n'.format(
element, strFunctions.cap(attrib['name'])))
output.write('{\n')
output.write('\t{0} *temp = new {0}();\n'.format(attrib['element']))
output.write('\tif (temp != NULL) m{0}.appendAndOwn(temp);\n'.format(
strFunctions.cap(attrib['name'])))
output.write('\treturn temp;\n')
output.write('}\n\n')
elif attrib.has_key('concrete'):
for elem in attrib['concrete']:
output.write('/**\n')
output.write(
' * Creates a new {0} object, adds it to this {1}s\n'.format(
elem['element'], element))
output.write(
' * {0} and returns the {1} object created. \n'.format(
element, elem['element']))
output.write(' *\n')
output.write(' * @return a new {0} object instance\n'.format(
elem['element']))
output.write(' *\n')
output.write(' * @see add{0}(const {1}* {2})\n'.format(
strFunctions.cap(elem['name']), attrib['element'],
strFunctions.objAbbrev(attrib['element'])))
output.write(' */\n')
output.write('{0}* \n'.format(elem['element']))
output.write('{0}::create{1}()\n'.format(
element, strFunctions.cap(elem['name'])))
output.write('{\n')
output.write('\t{0} *temp = new {0}();\n'.format(elem['element']))
output.write(
'\tif (temp != NULL) m{0}.appendAndOwn(temp);\n'.format(
strFunctions.cap(attrib['name'])))
output.write('\treturn temp;\n')
output.write('}\n\n')
def createCode(element, code):
type = element['name']
name = element['name']
if element.has_key('elementName'):
name = strFunctions.cap(element['elementName'])
if element.has_key('element'):
type = element['element']
listOf = generalFunctions.writeListOf(name)
writeConstructors(name, type, element['package'], code)
writeGetFunctions(code, name, type)
code.write('/**\n')
code.write(' * Adds a copy the given \"{0}\" to this {1}.\n'.format(
type, listOf))
code.write(' *\n')
code.write(' * @param {0}; the {1} object to add\n'.format(
strFunctions.objAbbrev(type), type))
code.write(' *\n')
code.write(' * @return integer value indicating success/failure of the\n')
code.write(' * function. @if clike The value is drawn from the\n')
code.write(
' * enumeration #OperationReturnValues_t. @endif The possible values\n'
)
code.write(' * returned by this function are:\n')
code.write(' * @li LIBSEDML_OPERATION_SUCCESS\n')
code.write(' * @li LIBSEDML_INVALID_ATTRIBUTE_VALUE\n')
code.write(' */\n')
code.write('int\n')
code.write('{0}::add{1}(const {2}* {3})\n'.format(
listOf, strFunctions.cap(name), type, strFunctions.objAbbrev(type)))
code.write('{\n')
code.write(
' if({0} == NULL) return LIBSEDML_INVALID_ATTRIBUTE_VALUE;\n'.format(
strFunctions.objAbbrev(type)))
code.write(' append({0});\n'.format(strFunctions.objAbbrev(type)))
code.write(' return LIBSEDML_OPERATION_SUCCESS;\n')
code.write('}\n\n\n')
code.write('/**\n')
code.write(' * Get the number of {0} objects in this {1}.\n'.format(
type, listOf))
code.write(' *\n')
code.write(' * @return the number of {0} objects in this {1}\n'.format(
type, listOf))
code.write(' */\n')
code.write('unsigned int\n')
code.write('{0}::getNum{1}s() const\n'.format(listOf,
strFunctions.cap(name)))
code.write('{\n')
code.write(' return size();\n')
code.write('}\n\n')
if element.has_key('abstract') == False or (element.has_key('abstract') and
element['abstract'] == False):
code.write('/**\n')
code.write(
' * Creates a new {0} object, adds it to this {1}s\n'.format(
type, listOf))
code.write(' * {0} and returns the {1} object created.\n'.format(
element['name'], type))
code.write(' *\n')
code.write(' * @return a new {0} object instance\n'.format(type))
code.write(' *\n')
code.write(' * @see add{0}(const {0}* {1})\n'.format(
type, strFunctions.objAbbrev(type)))
code.write(' */\n')
code.write('{0}*\n'.format(type))
code.write('{0}::create{1}()\n'.format(listOf, strFunctions.cap(name)))
code.write('{\n')
code.write(' {0} *temp = new {0}();\n'.format(type))
code.write(' if (temp != NULL) appendAndOwn(temp);\n')
code.write(' return temp;\n')
code.write('}\n\n')
elif element.has_key('concrete'):
for elem in element['concrete']:
code.write('/**\n')
code.write(
' * Creates a new {0} object, adds it to this {1}\n'.format(
elem['element'], listOf))
code.write(' * {0} and returns the {1} object created.\n'.format(
elem['name'], elem['element']))
code.write(' *\n')
code.write(' * @return a new {0} object instance\n'.format(
elem['element']))
code.write(' *\n')
code.write(' * @see add{0}(const {1}* {2})\n'.format(
strFunctions.cap(elem['name']), type,
strFunctions.objAbbrev(type)))
code.write(' */\n')
code.write('{0}*\n'.format(elem['element']))
code.write('{0}::create{1}()\n'.format(
listOf, strFunctions.cap(elem['name'])))
code.write('{\n')
code.write(' {0} *temp = new {0}();\n'.format(elem['element']))
code.write(' if (temp != NULL) appendAndOwn(temp);\n')
code.write(' return temp;\n')
code.write('}\n\n')
writeRemoveFunctions(code, name, type)
generalFunctions.writeCommonCPPCode(code, element['name'],
element['typecode'], None, True, False,
False, element)
elementName = element['name']
if element.has_key('elementName'):
elementName = element['elementName']
writeProtectedFunctions(code, element['name'], element['package'],
elementName, element)
def writeGetFunction(attrib, output, element):
att = generalFunctions.parseAttributeForC(attrib)
attName = att[0]
capAttName = att[1]
attType = att[2]
if att[3] == 'const char *':
attTypeCode = 'const char *'
else:
attTypeCode = att[3]
num = att[4]
type = attrib['type']
if type != 'element' and type != 'lo_element' and type != 'XMLNode*' and type != 'inline_lo_element':
output.write('/**\n')
output.write(
' * Returns the value of the \"{0}\" attribute of the given {1}_t\n'
.format(attName, element))
output.write(' * structure.\n *\n')
output.write(' * @param {0} the {1}_t structure.\n *\n'.format(
strFunctions.objAbbrev(element), element))
output.write(
' * @return the {0} of this structure.\n *\n'.format(attName))
output.write(' * @member of {0}_t\n'.format(element))
output.write(' */\n')
output.write('LIBSBML_EXTERN\n')
output.write('{0}\n'.format(attTypeCode))
output.write('{0}_get{1}'.format(element, capAttName))
output.write('(const {0}_t * {1});\n\n\n'.format(
element, strFunctions.objAbbrev(element)))
elif type == 'XMLNode*':
output.write('LIBSBML_EXTERN\n')
output.write('XMLNode_t*\n')
output.write('{0}_get{1}'.format(element, capAttName))
output.write('({0}_t * {1});\n\n\n'.format(
element, strFunctions.objAbbrev(element)))
elif type == 'element':
if attrib['name'] == 'Math' or attrib['name'] == 'math':
output.write('/**\n')
output.write(
' * Gets the mathematical expression of this {0}_t structure as an\n'
.format(element))
output.write(' * ASTNode_t structure.\n *\n')
output.write(' * @param {0} the {1}_t structure.\n *\n'.format(
strFunctions.objAbbrev(element), element))
output.write(
' * @return the math for this {0}_t, as an ASTNode_t.\n *\n'.
format(element))
output.write(' * @member of {0}_t\n'.format(element))
output.write(' */\n')
output.write('LIBSBML_EXTERN\n')
output.write('const ASTNode_t*\n')
output.write('{0}_getMath'.format(element))
output.write('(const {0}_t * {1});\n\n\n'.format(
element, strFunctions.objAbbrev(element)))
else:
output.write('LIBSBML_EXTERN\n')
output.write('{0}_t*\n'.format(strFunctions.cap(
attrib['element'])))
output.write('{0}_get{1}'.format(element, capAttName))
output.write('({0}_t * {1});\n\n\n'.format(
element, strFunctions.objAbbrev(element)))
if attrib.has_key('abstract') == False or (
attrib.has_key('abstract')
and attrib['abstract'] == False):
output.write('LIBSBML_EXTERN\n')
output.write('{0}_t*\n'.format(
strFunctions.cap(attrib['element'])))
output.write('{0}_create{1}'.format(element, capAttName))
output.write('({0}_t * {1});\n\n\n'.format(
element, strFunctions.objAbbrev(element)))
else:
for elem in generalFunctions.getConcretes(
attrib['root'], attrib['concrete']):
output.write('LIBSBML_EXTERN\n')
output.write('{0}_t *\n'.format(elem['element']))
output.write('{0}_create{1}({0}_t * {2}'.format(
element, strFunctions.cap(elem['name']),
strFunctions.objAbbrev(element)))
output.write(');\n\n\n')
def writeListOfSubElements(attrib, output, element):
loname = generalFunctions.getListOfClassName(attrib, strFunctions.cap(attrib["element"]))
output.write("LIBSBML_EXTERN\n")
output.write("int\n")
output.write(
"{0}_add{1}({0}_t * {2}, ".format(element, strFunctions.cap(attrib["name"]), strFunctions.objAbbrev(element))
)
output.write("{0}_t * {1});\n\n\n".format(attrib["element"], strFunctions.objAbbrev(attrib["element"])))
if attrib.has_key("abstract") == False or (attrib.has_key("abstract") and attrib["abstract"] == False):
output.write("LIBSBML_EXTERN\n")
output.write("{0}_t *\n".format(attrib["element"]))
output.write(
"{0}_create{1}({0}_t * {2}".format(
element, strFunctions.cap(attrib["name"]), strFunctions.objAbbrev(element)
)
)
output.write(");\n\n\n")
elif attrib.has_key("concrete") and attrib.has_key("root"):
for elem in generalFunctions.getConcretes(attrib["root"], attrib["concrete"]):
output.write("LIBSBML_EXTERN\n")
output.write("{0}_t *\n".format(elem["element"]))
output.write(
"{0}_create{1}({0}_t * {2}".format(
element, strFunctions.cap(elem["name"]), strFunctions.objAbbrev(element)
)
)
output.write(");\n\n\n")
output.write("LIBSBML_EXTERN\n")
output.write("ListOf_t *\n")
output.write("{0}_get{1}({0}_t * {2}) ".format(element, loname, strFunctions.objAbbrev(element)))
output.write(";\n\n\n")
output.write("LIBSBML_EXTERN\n")
output.write("{0}_t *\n".format(attrib["element"]))
output.write(
"{0}_get{1}({0}_t * {2}, ".format(element, strFunctions.cap(attrib["name"]), strFunctions.objAbbrev(element))
)
output.write("unsigned int n);\n\n\n")
output.write("LIBSBML_EXTERN\n")
output.write("{0}_t *\n".format(attrib["element"]))
output.write(
"{0}_get{1}ById({0}_t * {2}, ".format(
element, strFunctions.cap(attrib["name"]), strFunctions.objAbbrev(element)
)
)
output.write("const char * sid);\n\n\n")
output.write("LIBSBML_EXTERN\n")
output.write("unsigned int\n")
output.write(
"{0}_getNum{1}({0}_t * {2}".format(element, strFunctions.capp(attrib["name"]), strFunctions.objAbbrev(element))
)
output.write(");\n\n\n")
output.write("LIBSBML_EXTERN\n")
output.write("{0}_t *\n".format(attrib["element"]))
output.write(
"{0}_remove{1}({0}_t * {2}, ".format(element, strFunctions.cap(attrib["name"]), strFunctions.objAbbrev(element))
)
output.write("unsigned int n);\n\n\n")
output.write("LIBSBML_EXTERN\n")
output.write("{0}_t *\n".format(attrib["element"]))
output.write(
"{0}_remove{1}ById({0}_t * {2}, ".format(
element, strFunctions.cap(attrib["name"]), strFunctions.objAbbrev(element)
)
)
output.write("const char * sid);\n\n\n")
def writeHasReqdElementsFunction(output, element):
output.write('LIBSEDML_EXTERN\n')
output.write('int\n')
output.write('{0}_hasRequiredElements'.format(element))
output.write('({0}_t * {1});\n\n\n'.format(
element, strFunctions.objAbbrev(element)))
def writeLOFunctions(fileOut, object, nameOfClass, pkg):
ob = strFunctions.objAbbrev(object)
fileOut.write('/*\n')
fileOut.write(
' * Returns the ListOf{0}s in this plugin object.\n'.format(object))
fileOut.write(' */\n')
fileOut.write('const ListOf{0}s* \n'.format(object))
fileOut.write('{0}::getListOf{1}s () const\n'.format(nameOfClass, object))
fileOut.write('{\n')
fileOut.write(' return &this->m{0}s;\n'.format(object))
fileOut.write('}\n\n\n')
fileOut.write('/*\n')
fileOut.write(
' * Returns the ListOf{0}s in this plugin object.\n'.format(object))
fileOut.write(' */\n')
fileOut.write('ListOf{0}s* \n'.format(object))
fileOut.write('{0}::getListOf{1}s ()\n'.format(nameOfClass, object))
fileOut.write('{\n')
fileOut.write(' return &this->m{0}s;\n'.format(object))
fileOut.write('}\n\n\n')
fileOut.write('/*\n')
fileOut.write(
' * Returns the {0} object that belongs to the given index.\n'.format(
object))
fileOut.write(' */\n')
fileOut.write('const {0}*\n'.format(object))
fileOut.write('{0}::get{1}(unsigned int n) const\n'.format(
nameOfClass, object))
fileOut.write('{\n')
fileOut.write(
' return static_cast<const {0}*>(m{0}s.get(n));\n'.format(object))
fileOut.write('}\n\n\n')
fileOut.write('/*\n')
fileOut.write(
' * Returns the {0} object that belongs to the given index.\n'.format(
object))
fileOut.write(' */\n')
fileOut.write('{0}*\n'.format(object))
fileOut.write('{0}::get{1}(unsigned int n)\n'.format(nameOfClass, object))
fileOut.write('{\n')
fileOut.write(' return static_cast<{0}*>(m{0}s.get(n));\n'.format(object))
fileOut.write('}\n\n\n')
fileOut.write('/*\n')
fileOut.write(
' * Returns the {0} object based on its identifier.\n'.format(object))
fileOut.write(' */\n')
fileOut.write('const {0}*\n'.format(object))
fileOut.write('{0}::get{1}(const std::string& sid) const\n'.format(
nameOfClass, object))
fileOut.write('{\n')
fileOut.write(
' return static_cast<const {0}*>(m{0}s.get(sid));\n'.format(object))
fileOut.write('}\n\n\n')
fileOut.write('/*\n')
fileOut.write(
' * Returns the {0} object based on its identifier.\n'.format(object))
fileOut.write(' */\n')
fileOut.write('{0}*\n'.format(object))
fileOut.write('{0}::get{1}(const std::string& sid)\n'.format(
nameOfClass, object))
fileOut.write('{\n')
fileOut.write(
' return static_cast<{0}*>(m{0}s.get(sid));\n'.format(object))
fileOut.write('}\n\n\n')
fileOut.write('/*\n')
fileOut.write(
' * Adds a copy of the given {0} to the ListOf{0}s in this plugin object.\n'
.format(object))
fileOut.write(' */\n')
fileOut.write('int\n')
fileOut.write('{2}::add{0} (const {0}* {1})\n'.format(
object, strFunctions.lowerFirst(object), nameOfClass))
fileOut.write('{\n')
fileOut.write(' if ({0} == NULL)\n'.format(
strFunctions.lowerFirst(object)))
fileOut.write(' {\n')
fileOut.write(' return LIBSBML_OPERATION_FAILED;\n')
fileOut.write(' }\n')
fileOut.write(' else if ({0}->hasRequiredElements() == false)\n'.format(
strFunctions.lowerFirst(object)))
fileOut.write(' {\n')
fileOut.write(' return LIBSBML_INVALID_OBJECT;\n')
fileOut.write(' }\n')
fileOut.write(' else if (getLevel() != {0}->getLevel())\n'.format(
strFunctions.lowerFirst(object)))
fileOut.write(' {\n')
fileOut.write(' return LIBSBML_LEVEL_MISMATCH;\n')
fileOut.write(' }\n')
fileOut.write(' else if (getVersion() != {0}->getVersion())\n'.format(
strFunctions.lowerFirst(object)))
fileOut.write(' {\n')
fileOut.write(' return LIBSBML_VERSION_MISMATCH;\n')
fileOut.write(' }\n')
fileOut.write(
' else if (getPackageVersion() != {0}->getPackageVersion())\n'.format(
strFunctions.lowerFirst(object)))
fileOut.write(' {\n')
fileOut.write(' return LIBSBML_PKG_VERSION_MISMATCH;\n')
fileOut.write(' }\n')
fileOut.write(' else\n')
fileOut.write(' {\n')
fileOut.write(' m{0}s.append({1});\n'.format(
object, strFunctions.lowerFirst(object)))
fileOut.write(' }\n\n')
fileOut.write(' return LIBSBML_OPERATION_SUCCESS;\n\n')
fileOut.write('}\n\n\n')
fileOut.write('/*\n')
fileOut.write(
' * Creates a new {0} object and adds it to the ListOf{0}s in this plugin object.\n'
.format(object))
fileOut.write(' */\n')
fileOut.write('{0}* \n'.format(object))
fileOut.write('{1}::create{0} ()\n'.format(object, nameOfClass))
fileOut.write('{\n')
fileOut.write(' {0}* {1} = NULL;\n\n'.format(object, ob))
fileOut.write(' try\n')
fileOut.write(' {\n')
fileOut.write(' {0}_CREATE_NS({1}ns, getSBMLNamespaces());\n'.format(
pkg.upper(), pkg.lower()))
fileOut.write(' {0} = new {1}({2}ns);\n'.format(ob, object,
pkg.lower()))
fileOut.write(' delete {0}ns;\n'.format(pkg.lower()))
fileOut.write(' }\n')
fileOut.write(' catch(...)\n')
fileOut.write(' {\n')
fileOut.write(' }\n\n')
fileOut.write(' if ({0} != NULL)\n'.format(ob))
fileOut.write(' {\n')
fileOut.write(' m{0}s.appendAndOwn({1});\n'.format(object, ob))
fileOut.write(' }\n\n')
fileOut.write(' return {0};\n'.format(ob))
fileOut.write('}\n\n\n')
fileOut.write('/*\n')
fileOut.write(
' * Removes the nth {0} object from this plugin object\n'.format(
object))
fileOut.write(' */\n')
fileOut.write('{0}* \n'.format(object))
fileOut.write('{1}::remove{0}(unsigned int n)\n'.format(
object, nameOfClass))
fileOut.write('{\n')
fileOut.write(
' return static_cast<{0}*>(m{0}s.remove(n));\n'.format(object))
fileOut.write('}\n\n\n')
fileOut.write('/*\n')
fileOut.write(
' * Removes the {0} object with the given id from this plugin object\n'
.format(object))
fileOut.write(' */\n')
fileOut.write('{0}* \n'.format(object))
fileOut.write('{1}::remove{0}(const std::string& sid)\n'.format(
object, nameOfClass))
fileOut.write('{\n')
fileOut.write(
' return static_cast<{0}*>(m{0}s.remove(sid));\n'.format(object))
fileOut.write('}\n\n\n')
fileOut.write('/*\n')
fileOut.write(
' * Returns the number of {0} objects in this plugin object.\n'.format(
object))
fileOut.write(' */\n')
fileOut.write('unsigned int \n')
fileOut.write('{1}::getNum{0}s () const\n'.format(object, nameOfClass))
fileOut.write('{\n')
fileOut.write(' return m{0}s.size();\n'.format(object))
fileOut.write('}\n\n\n')
