def validate_entity(self, entity: Entity):
# identify which attribute cases the error
attribute = 'fake_attribute'
error_msg = 'Example error message'
entity.add_error(attribute, error_msg)
# or if multiple errors occur for the same attribute
error_msgs = ['error 1', 'error 2']
entity.add_errors(attribute, error_msgs)
raise NotImplementedError('Example validate entity used')
def __add_errors_to_entity(entity: Entity, schema_errors: dict):
for schema_error in schema_errors:
attribute_name = str(schema_error['dataPath']).strip('.')
stripped_errors = []
for error in schema_error['errors']:
error.replace('"', '\'')
if error == 'should NOT be valid':
error = JsonValidator.__improve_not_be_valid_error_message(
entity.identifier.entity_type, attribute_name)
if error != 'should match some schema in anyOf':
stripped_errors.append(error)
entity.add_errors(attribute_name, stripped_errors)
def validate_entity(self, entity: Entity):
sample = entity.attributes
sample_errors = {}
if 'tax_id' in sample and 'scientific_name' in sample:
tax_response = self.ena_taxonomy.validate_taxonomy(
tax_id=sample['tax_id'],
scientific_name=sample['scientific_name']
)
sample_errors = self.get_taxonomy_errors(tax_response)
else:
if 'tax_id' in sample:
tax_response = self.ena_taxonomy.validate_tax_id(sample['tax_id'])
sample_errors = self.get_errors(tax_response, 'tax_id')
elif 'scientific_name' in sample:
tax_response = self.ena_taxonomy.validate_scientific_name(sample['scientific_name'])
sample_errors = self.get_errors(tax_response, 'scientific_name')
for attribute, errors in sample_errors.items():
entity.add_errors(attribute, errors)
