# join_our_list = "(Join/ask questions at https://groups.google.com/forum/#!forum/physicell-users)\n"
# create the tabs, but don't display yet
about_tab = AboutTab()
config_tab = ConfigTab()
xml_file = os.path.join('data', 'PhysiCell_settings.xml')
full_xml_filename = os.path.abspath(xml_file)
tree = ET.parse(
full_xml_filename) # this file cannot be overwritten; part of tool distro
xml_root = tree.getroot()
user_tab = UserTab()
svg = SVGTab()
sub = SubstrateTab()
nanoHUB_flag = False
if ('HOME' in os.environ.keys()):
nanoHUB_flag = "home/nanohub" in os.environ['HOME']
def read_config_cb(_b):
# with debug_view:
# print("read_config_cb", read_config.value)
if read_config.value is None: #occurs when a Run just finishes and we update pulldown with the new cache dir??
# with debug_view:
# print("NOTE: read_config_cb(): No read_config.value. Returning!")
return
)
# create the tabs, but don't display yet
config_tab = ConfigTab()
#cells = CellsTab()
user_tab = UserTab()
#full_filename = os.path.abspath('../config/PhysiCell_settings.xml')
full_xml_filename = os.path.abspath('myconfig.xml')
#print('full_xml_filename=',full_xml_filename)
tree = ET.parse(
full_xml_filename) # this file cannot be overwritten; part of tool distro
xml_root = tree.getroot()
svg = SVGTab()
sub = SubstrateTab()
#nanoHUB_flag = "home/nanohub" in os.environ['HOME'] # True/False (running on nanoHUB or not)
nanoHUB_flag = False
def read_config_cb(_b):
with debug_view:
print("read_config", read_config.value)
# e.g. "DEFAULT" -> read_config /Users/heiland/dev/pc4nanobio/data/nanobio_settings.xml
# "<time-stamp>" -> read_config /Users/heiland/.cache/pc4nanobio/pc4nanobio/59c60c0a402e4089b71b140689075f0b
# "t360.xml" -> read_config /Users/heiland/.local/share/pc4nanobio/t360.xml
if read_config.value is None: #rwh: happens when a Run just finishes and we update pulldown with the new cache dir??
return
# join_our_list = "(Join/ask questions at https://groups.google.com/forum/#!forum/physicell-users)\n"
# create the tabs, but don't display yet
about_tab = AboutTab()
config_tab = ConfigTab()
xml_file = os.path.join('data', 'PhysiCell_settings.xml')
full_xml_filename = os.path.abspath(xml_file)
tree = ET.parse(full_xml_filename) # this file cannot be overwritten; part of tool distro
xml_root = tree.getroot()
# microenv_tab = MicroenvTab()
user_tab = UserTab()
# svg = SVGTab()
sub = SubstrateTab()
nanoHUB_flag = False
if( 'HOME' in os.environ.keys() ):
nanoHUB_flag = "home/nanohub" in os.environ['HOME']
# callback when user selects a cached run in the 'Load Config' dropdown widget.
# HOWEVER, beware if/when this is called after a sim finishes and the Load Config dropdown widget reverts to 'DEFAULT'.
# In that case, we don't want to recompute substrate.py self.numx, self.numy because we're still displaying plots from previous sim.
def read_config_cb(_b):
# with debug_view:
# print("read_config_cb", read_config.value)
sub.first_time = True
xml_file = os.path.join('data', 'PhysiCell_settings.xml')
full_xml_filename = os.path.abspath(xml_file)
tree = ET.parse(
full_xml_filename) # this file cannot be overwritten; part of tool distro
xml_root = tree.getroot()
microenv_tab = MicroenvTab()
user_tab = UserTab()
if xml_root.find('.//cell_definitions'):
cell_types_tab = CellTypesTab()
# svg = SVGTab()
sub = SubstrateTab()
animate_tab = AnimateTab()
nanoHUB_flag = False
if ('HOME' in os.environ.keys()):
nanoHUB_flag = "home/nanohub" in os.environ['HOME']
# callback when user selects a cached run in the 'Load Config' dropdown widget.
# HOWEVER, beware if/when this is called after a sim finishes and the Load Config dropdown widget reverts to 'DEFAULT'.
# In that case, we don't want to recompute substrate.py self.numx, self.numy because we're still displaying plots from previous sim.
def read_config_cb(_b):
# with debug_view:
# print("read_config_cb", read_config.value)
sub.first_time = True
# join_our_list = "(Join/ask questions at https://groups.google.com/forum/#!forum/physicell-users)\n"
# create the tabs, but don't display yet
about_tab = AboutTab()
config_tab = ConfigTab()
xml_file = os.path.join('data', 'PhysiCell_settings.xml')
full_xml_filename = os.path.abspath(xml_file)
tree = ET.parse(
full_xml_filename) # this file cannot be overwritten; part of tool distro
xml_root = tree.getroot()
microenv_tab = MicroenvTab()
user_tab = UserTab()
# svg = SVGTab()
sub = SubstrateTab()
nanoHUB_flag = False
if ('HOME' in os.environ.keys()):
nanoHUB_flag = "home/nanohub" in os.environ['HOME']
def read_config_cb(_b):
# with debug_view:
# print("read_config_cb", read_config.value)
if read_config.value is None: #occurs when a Run just finishes and we update pulldown with the new cache dir??
# with debug_view:
# print("NOTE: read_config_cb(): No read_config.value. Returning!")
return
# create the tabs, but don't display yet
about_tab = AboutTab()
config_tab = ConfigTab()
xml_file = os.path.join('data', 'PhysiCell_settings.xml')
full_xml_filename = os.path.abspath(xml_file)
tree = ET.parse(
full_xml_filename) # this file cannot be overwritten; part of tool distro
xml_root = tree.getroot()
microenv_tab = MicroenvTab()
cell_tab = CellDefTab()
user_tab = UserTab()
# svg = SVGTab()
sub = SubstrateTab()
nanoHUB_flag = False
if ('HOME' in os.environ.keys()):
nanoHUB_flag = "home/nanohub" in os.environ['HOME']
# callback when user selects a cached run in the 'Load Config' dropdown widget.
# HOWEVER, beware if/when this is called after a sim finishes and the Load Config dropdown widget reverts to 'DEFAULT'.
# In that case, we don't want to recompute substrate.py self.numx, self.numy because we're still displaying plots from previous sim.
def read_config_cb(_b):
# with debug_view:
# print("read_config_cb", read_config.value)
sub.first_time = True
config_tab = ConfigTab()
#full_filename = os.path.abspath('data/PhysiCell_settings.xml')
xml_file = os.path.join('data', 'PhysiCell_settings.xml')
full_xml_filename = os.path.abspath(xml_file)
nanoHUB_flag = False
if ('HOME' in os.environ.keys()):
nanoHUB_flag = "home/nanohub" in os.environ['HOME']
tree = ET.parse(
full_xml_filename) # this file cannot be overwritten; part of tool distro
xml_root = tree.getroot()
user_tab = UserTab()
svg = SVGTab(nanoHUB_flag)
sub = SubstrateTab(nanoHUB_flag)
def read_config_cb(_b):
# with debug_view:
# print("read_config_cb", read_config.value)
if read_config.value is None: #occurs when a Run just finishes and we update pulldown with the new cache dir??
# with debug_view:
# print("NOTE: read_config_cb(): No read_config.value. Returning!")
return
if os.path.isdir(read_config.value):
is_dir = True
config_file = os.path.join(read_config.value, 'config.xml')
else:
# join_our_list = "(Join/ask questions at https://groups.google.com/forum/#!forum/physicell-users)\n"
# create the tabs, but don't display yet
about_tab = AboutTab()
config_tab = ConfigTab()
xml_file = os.path.join('data', 'PhysiCell_settings.xml')
full_xml_filename = os.path.abspath(xml_file)
tree = ET.parse(full_xml_filename) # this file cannot be overwritten; part of tool distro
xml_root = tree.getroot()
microenv_tab = MicroenvTab()
user_tab = UserTab()
# svg = SVGTab()
sub = SubstrateTab()
nanoHUB_flag = False
if( 'HOME' in os.environ.keys() ):
nanoHUB_flag = "home/nanohub" in os.environ['HOME']
def read_config_cb(_b):
# with debug_view:
# print("read_config_cb", read_config.value)
sub.first_time = True
if read_config.value is None: #occurs when a Run just finishes and we update pulldown with the new cache dir??
# with debug_view:
# print("NOTE: read_config_cb(): No read_config.value. Returning!")
