def test_normalize_whitespace():
assert_equals(
"zip tang pow a = 2",
utils.normalize_whitespace(" zip\ttang pow \n a = 2 "))
result = utils.normalize_lines(
" zip\ttang pow \n a = 2 \n b = 3 ")
assert_equals("zip tang pow\na = 2\nb = 3", result)
def test_provenance():
# Create a File Entity
fname = utils.make_bogus_data_file()
schedule_for_cleanup(fname)
data_entity = syn.store(File(fname, parent=project['id']))
# Create a File Entity of Code
fd, path = tempfile.mkstemp(suffix=".py")
with os.fdopen(fd, 'w') as f:
f.write(
utils.normalize_lines("""
## Chris's fabulous random data generator
############################################################
import random
random.seed(12345)
data = [random.gauss(mu=0.0, sigma=1.0) for i in range(100)]
"""))
schedule_for_cleanup(path)
code_entity = syn.store(File(path, parent=project['id']))
# Create a new Activity asserting that the Code Entity was 'used'
activity = Activity(name='random.gauss',
description='Generate some random numbers')
activity.used(code_entity, wasExecuted=True)
activity.used(
{
'name': 'Superhack',
'url': 'https://github.com/joe_coder/Superhack'
},
wasExecuted=True)
activity = syn.setProvenance(data_entity, activity)
# Retrieve and verify the saved Provenance record
retrieved_activity = syn.getProvenance(data_entity)
assert retrieved_activity == activity
# Test Activity update
new_description = 'Generate random numbers like a gangsta'
retrieved_activity['description'] = new_description
updated_activity = syn.updateActivity(retrieved_activity)
assert updated_activity['name'] == retrieved_activity['name']
assert updated_activity['description'] == new_description
# Test delete
syn.deleteProvenance(data_entity)
assert_raises(SynapseHTTPError, syn.getProvenance, data_entity['id'])
def test_provenance():
# Create a File Entity
fname = utils.make_bogus_data_file()
schedule_for_cleanup(fname)
data_entity = syn.store(File(fname, parent=project['id']))
# Create a File Entity of Code
fd, path = tempfile.mkstemp(suffix=".py")
with os.fdopen(fd, 'w') as f:
f.write(utils.normalize_lines("""
## Chris's fabulous random data generator
############################################################
import random
random.seed(12345)
data = [random.gauss(mu=0.0, sigma=1.0) for i in range(100)]
"""))
schedule_for_cleanup(path)
code_entity = syn.store(File(path, parent=project['id']))
# Create a new Activity asserting that the Code Entity was 'used'
activity = Activity(name='random.gauss', description='Generate some random numbers')
activity.used(code_entity, wasExecuted=True)
activity.used({'name':'Superhack', 'url':'https://github.com/joe_coder/Superhack'}, wasExecuted=True)
activity = syn.setProvenance(data_entity, activity)
# Retrieve and verify the saved Provenance record
retrieved_activity = syn.getProvenance(data_entity)
assert retrieved_activity == activity
# Test Activity update
new_description = 'Generate random numbers like a gangsta'
retrieved_activity['description'] = new_description
updated_activity = syn.updateActivity(retrieved_activity)
assert updated_activity['name'] == retrieved_activity['name']
assert updated_activity['description'] == new_description
# Test delete
syn.deleteProvenance(data_entity)
assert_raises(SynapseHTTPError, syn.getProvenance, data_entity['id'])
def test_normalize_whitespace():
assert "zip tang pow a = 2" == utils.normalize_whitespace(" zip\ttang pow \n a = 2 ")
result = utils.normalize_lines(" zip\ttang pow \n a = 2 \n b = 3 ")
assert "zip tang pow\na = 2\nb = 3" == result
def test_normalize_whitespace():
assert "zip tang pow a = 2" == utils.normalize_whitespace(" zip\ttang pow \n a = 2 ")
result = utils.normalize_lines(" zip\ttang pow \n a = 2 \n b = 3 ")
assert "zip tang pow\na = 2\nb = 3" == result
def test_normalize_whitespace():
assert_equals("zip tang pow a = 2", utils.normalize_whitespace(" zip\ttang pow \n a = 2 "))
result = utils.normalize_lines(" zip\ttang pow \n a = 2 \n b = 3 ")
assert_equals("zip tang pow\na = 2\nb = 3", result)
