class SupportConnectivityIdentifierTestCase(unittest.TestCase):
def setUp(self):
sampler = T2DSampler()
self.testTable = sampler.getTestTable()
self.scIdentifier = SupportConnectivityIdentifier()
self.testTables = sampler.getTablesSubjectIdentificationGoldStandard()
def testSupportConnectivityIdentifier(self):
alphas = numpy.arange(0,1.1,0.05)
for alpha in alphas:
correctly = 0
for table in self.testTables[:]:
supportCeil = 100
supportFloor = 0
connectivityThreshold = 0
subjectColumn = self.scIdentifier.identifySubjectColumn(table, supportFloor, supportCeil, connectivityThreshold, alpha)
if table.isSubjectColumn(subjectColumn):
correctly += 1
print "alpha: %s" %(alpha)
print correctly
print float(correctly) / len(self.testTables)
def setUp(self):
sampler = T2DSampler()
self.testTable = sampler.getTestTable()
self.scIdentifier = SupportConnectivityIdentifier()
self.testTables = sampler.getTablesSubjectIdentificationGoldStandard()