def main(configfilename, tagfilename=None):
config = parser.parse(configfilename)
if tagfilename is not None:
bboxes = io.utils.read_bbox_tag_filename(tagfilename)
else:
bboxes = None
iterator = tc.create_chunk_edges_tasks(
config["image"],
config["tempoutput"],
config["baseseg"],
storagestr=config["storagestrs"][0],
hashmax=config["nummergetasks"],
storagedir=config["storagestrs"][1],
volshape=config["volshape"],
chunkshape=config["chunkshape"],
startcoord=config["startcoord"],
patchsz=config["patchshape"],
normcloudpath=config["normcloudpath"],
resolution=config["voxelres"],
aggscratchpath=config["aggscratchpath"],
aggchunksize=config["aggchunksize"],
aggmaxmip=config["aggmaxmip"],
aggstartcoord=config["startcoord"],
bboxes=bboxes)
tq = TaskQueue(config["queueurl"])
tq.insert_all(iterator)
def main(configfilename):
config = parser.parse(configfilename)
task = tc.create_index_seg_map_task(config["storagestrs"][0])
tq = TaskQueue(config["queueurl"])
tq.insert_all([task])
def main(configfilename):
config = parser.parse(configfilename)
iterator = tc.create_merge_overlaps_task(config["storagestrs"][0])
tq = TaskQueue(config["queueurl"])
tq.insert_all([iterator])
def main(configfilename):
config = parser.parse(configfilename)
task = tc.create_seg_graph_cc_task(config["storagestrs"][0],
config["nummergetasks"])
tq = TaskQueue(config["queueurl"])
tq.insert_all([task])
def main(configfilename):
config = parser.parse(configfilename)
iterator = tc.create_pick_edge_tasks(config["storagestrs"][0],
config["nummergetasks"])
tq = TaskQueue(config["queueurl"])
tq.insert_all(iterator)
def main(configfilename):
config = parser.parse(configfilename)
task = tc.create_merge_ccs_task(
config["storagestrs"][0], config["szthresh"],
config["maxfaceshape"])
tq = TaskQueue(config["queueurl"])
tq.insert_all([task])
def main(configfilename):
config = parser.parse(configfilename)
iterator = tc.create_match_contins_tasks(
config["storagestrs"][0],
config["nummergetasks"],
max_faceshape=config["maxfaceshape"])
tq = TaskQueue(config["queueurl"])
tq.insert_all(iterator)
def main(configfilename):
config = parser.parse(configfilename)
iterator = tc.create_merge_dup_tasks(config["storagestrs"][0],
config["nummergetasks"],
config["mergethresh"],
config["szthresh"],
config["voxelres"],
config["storagestrs"][1])
tq = TaskQueue(config["queueurl"])
tq.insert_all(iterator)
def main(configfilename):
config = parser.parse(configfilename)
iterator = tc.create_overlap_tasks(config["output"],
config["baseseg"],
config["storagestrs"][0],
volshape=config["volshape"],
chunkshape=config["chunkshape"],
startcoord=config["startcoord"],
resolution=config["voxelres"])
tq = TaskQueue(config["queueurl"])
tq.insert_all(iterator)
def main(configfilename):
config = parser.parse(configfilename)
enforce_szthresh = config["workflowtype"] == "Segmentation"
szthresh = config["szthresh"] if enforce_szthresh else None
iterator = tc.create_merge_seginfo_tasks(
config["storagestrs"][0],
config["nummergetasks"],
aux_storagestr=config["storagestrs"][1],
szthresh=szthresh)
tq = TaskQueue(config["queueurl"])
tq.insert_all(iterator)
def main(configfilename):
config = parser.parse(configfilename)
startcoord = Vec(*config["startcoord"])
volshape = Vec(*config["volshape"])
bounds = Bbox(startcoord, startcoord + volshape)
iterator = tc.create_overlap_tasks(config["output"],
config["baseseg"],
config["storagestrs"][0],
bounds=bounds,
shape=config["chunkshape"],
mip=config["voxelres"])
tq = TaskQueue(config["queueurl"])
tq.insert_all(iterator)
def main(configfilename):
config = parser.parse(configfilename)
startcoord = Vec(*config["startcoord"])
volshape = Vec(*config["volshape"])
bounds = Bbox(startcoord, startcoord + volshape)
iterator = tc.create_chunk_edges_tasks(
config["image"], config["tempoutput"],
config["baseseg"], storagestr=config["storagestrs"][0],
hashmax=config["nummergetasks"],
storagedir=config["storagestrs"][1],
bounds=bounds, chunkshape=config["chunkshape"],
patchsz=config["patchshape"],
resolution=config["voxelres"])
tq = TaskQueue(config["queueurl"])
tq.insert_all(iterator)
def main(configfilename):
config = parser.parse(configfilename)
startcoord = Vec(*config["startcoord"])
volshape = Vec(*config["volshape"])
bounds = Bbox(startcoord, startcoord + volshape)
iterator = tc.create_connected_component_tasks(
config["descriptor"],
config["tempoutput"],
storagestr=config["storagestrs"][0],
storagedir=config["storagestrs"][1],
cc_thresh=config["ccthresh"],
sz_thresh=config["dustthresh"],
bounds=bounds,
shape=config["chunkshape"],
mip=config["voxelres"],
hashmax=config["nummergetasks"])
tq = TaskQueue(config["queueurl"])
tq.insert_all(iterator)
def main(configfilename, tagfilename=None):
config = parser.parse(configfilename)
if tagfilename is not None:
bboxes = io.utils.read_bbox_tag_filename(tagfilename)
else:
bboxes = None
iterator = tc.create_fixsegids_tasks(
storagestr=config["storagestrs"][0],
hashmax=config["nummergetasks"],
volshape=config["volshape"],
chunkshape=config["chunkshape"],
startcoord=config["startcoord"],
aggscratchpath=config["aggscratchpath"],
aggchunksize=config["aggchunksize"],
aggmaxmip=config["aggmaxmip"],
aggstartcoord=config["startcoord"],
bboxes=bboxes)
tq = TaskQueue(config["queueurl"])
tq.insert_all(iterator)
def main(configfilename, tagfilename=None):
config = parser.parse(configfilename)
if tagfilename is not None:
bboxes = io.utils.read_bbox_tag_filename(tagfilename)
else:
bboxes = None
iterator = tc.create_connected_component_tasks(
config["descriptor"], config["tempoutput"],
storagestr=config["storagestrs"][0],
storagedir=config["storagestrs"][1],
ccthresh=config["ccthresh"],
szthresh=config["dustthresh"],
volshape=config["volshape"],
chunkshape=config["chunkshape"],
startcoord=config["startcoord"],
resolution=config["voxelres"],
hashmax=config["nummergetasks"],
bboxes=bboxes)
tq = TaskQueue(config["queueurl"])
tq.insert_all(iterator)
