def rotate2full(self, mat, error=False):
"""
Rotate a prediction back into full-rank space (i.e. bin space)
:param mat: Tensor in low-rank space
:param error: Is this a tensor of uncertainties? [default = False]
:return full_rank: Full rank prediction
"""
if self.unitCore is not None:
tmp_mat = mat * self.coreStd
else:
tmp_mat = mat
full_rank = tlb.to_numpy(
tl.tenalg.multi_mode_dot(tl.tensor(tmp_mat),
self.factors,
modes=[0, 1],
transpose=False))
if self.unitMat is not None:
full_rank += self.pixMean
if error:
full_rank -= self.pixMean
return full_rank
def basisCompute(self):
"""
PCA compression of simulation data.
:return pca_basis: Matrix with columns as orthogonal basis vectors
:return pca_weights: Coefficients of basis vectors at simulation points
"""
X = tl.tensor(self.unitMat)
self.core, self.factors = tld.partial_tucker(
X[:, :, :],
modes=[0, 1],
tol=self.tol,
ranks=[self.user_dim, self.user_dim2])
self.core = tlb.to_numpy(self.core)
def assert_array_equal(a, b, *args, **kwargs):
np.testing.assert_array_equal(T.to_numpy(a), T.to_numpy(b), *args,
**kwargs)
def _tensor_to_numpy(x):
if T.is_tensor(x):
x = T.to_numpy(x)
return x[0] if x.shape == (1, ) else x
return x
for i, pattern in enumerate(patterns):
# Generate the original image
weight_img = gen_image(region=pattern,
image_height=image_height,
image_width=image_width)
weight_img = T.tensor(weight_img)
# Generate the labels
y = T.dot(partial_tensor_to_vec(X, skip_begin=1),
tensor_to_vec(weight_img))
# Plot the original weights
ax = fig.add_subplot(n_rows, n_columns, i * n_columns + 1)
ax.imshow(T.to_numpy(weight_img),
cmap=plt.cm.OrRd,
interpolation='nearest')
ax.set_axis_off()
if i == 0:
ax.set_title('Original\nweights')
for j, rank in enumerate(ranks):
# Create a tensor Regressor estimator
estimator = KruskalRegressor(weight_rank=rank,
tol=10e-7,
n_iter_max=100,
reg_W=1,
verbose=0)
def model_inference_category(option):
option.folderName = str(input('Please type in the folder name:'))
if not os.path.exists('./' + option.folderName):
os.makedirs('./' + option.folderName)
if option.model_name == '7':
y_train_predicted = option.fitted_final.predict(option.X_train)
y_test_predicted = option.fitted_final.predict(option.X_test)
option.train_residual = y_train_predicted - option.y_train
option.test_residual = y_test_predicted - option.y_test
option.rmse_train_final = sqrt(
mean_squared_error(option.y_train, y_train_predicted))
option.rmse_test_final = sqrt(
mean_squared_error(option.y_test, y_test_predicted))
res = sum(np.square(option.y_train - y_train_predicted))
tot = sum(np.square(option.y_train - np.mean(option.y_train)))
n = len(option.y_train)
p = 1
option.rsquared = 1 - res / tot
option.adj_rsquared = 1 - ((res / (n - p - 1)) / (tot / (n - 1)))
for i in range(option.y_train.shape[1]):
plt.figure(1)
plt.title('Residual Plot for Resistance')
plt.subplot(221)
plt.plot(y_train_predicted[:, i], option.train_residual[:, i],
'ro')
plt.xlabel('Predicted')
plt.ylabel('Residual')
plt.subplot(222)
plt.plot(option.train_residual[:, i][0:-2],
option.train_residual[:, i][1:-1], 'ro')
plt.xlabel('Residual Lag 1')
plt.ylabel('Residual')
plt.subplot(223)
plt.hist(option.train_residual[:, i], bins='auto')
plt.xlabel('Residual')
plt.ylabel('Frequency')
plt.subplot(224)
if (0 in np.nditer(np.std(option.train_residual[:, i]))):
z = option.train_residual[:, i]
else:
z = (option.train_residual[:, i] -
np.mean(option.train_residual[:, i])) / np.std(
option.train_residual[:, i])
stats.probplot(z, dist="norm", plot=plt)
plt.xlabel('Standard Quantile')
plt.ylabel('Residual Quantile')
plt.tight_layout()
plt.savefig('./' + option.folderName + '/residual_plot' + str(i) +
'.png')
plt.close()
plt.figure(2)
plt.title('Parameter Tuning Plot')
plt.scatter(option.candidate_lambda, option.corresponding_rmse_mean)
plt.xlabel('Candidate Lambda')
if option.model_name not in ['6', '13']:
plt.ylabel('Root Mean Squared Error')
else:
plt.ylabel('Accuracy')
plt.savefig('./' + option.folderName + '/parameter_tuning_plot.png')
plt.close()
elif option.model_name == '8':
y_train_predicted = option.fitted_final.evaluate(option.X_train,
option.y_train,
batch_size=32,
verbose=1,
sample_weight=None)
y_test_predicted = option.fitted_final.evaluate(option.X_test,
option.y_test,
batch_size=32,
verbose=1,
sample_weight=None)
print()
print("Loss = " + str(y_test_predicted[0]))
print("Test Accuracy = " + str(y_test_predicted[1]))
accuracy = option.fitted_final.history.history['acc']
val_accuracy = option.fitted_final.history.history['val_acc']
loss = option.fitted_final.history.history['loss']
val_loss = option.fitted_final.history.history['val_loss']
epochs = range(len(accuracy))
plt.plot(epochs, accuracy, 'bo', label='Training accuracy')
plt.plot(epochs, val_accuracy, 'b', label='Validation accuracy')
plt.title('Training and validation accuracy')
plt.legend()
plt.savefig('./' + option.folderName + '/accuracy_plot.png')
plt.close()
plt.figure()
plt.plot(epochs, loss, 'bo', label='Training loss')
plt.plot(epochs, val_loss, 'b', label='Validation loss')
plt.title('Training and validation loss')
plt.legend()
plt.savefig('./' + option.folderName + '/loss_plot.png')
plt.close()
elif option.model_name == '11':
#true regression weight
n_rows = 1
n_columns = option.max_rank + 1
fig = plt.figure()
ax = fig.add_subplot(n_rows, n_columns, 1)
ax.imshow(T.to_numpy(option.weight_img),
cmap=plt.cm.OrRd,
interpolation='nearest')
ax.set_axis_off()
ax.set_title('Original\nweights')
y_train_predicted = option.fitted_final.predict(option.X_train)
for j in range(option.max_rank):
#Visualise the learned weights
ax = fig.add_subplot(n_rows, n_columns, j + 2)
ax.imshow(T.to_numpy(option.fitted_final_weights[j]),
cmap=plt.cm.OrRd,
interpolation='nearest')
ax.set_axis_off()
ax.set_title('Learned\nrank = {}'.format(j + 1))
plt.suptitle(option.tensorReg_name)
plt.savefig('./' + option.folderName +
'/Learned_regression_weights.png')
plt.close()
elif option.model_name == '12':
Z_train_predicted = option.fitted_final.predict(
option.X_train)['z_predicted']
Z_test_predicted = option.fitted_final.predict(
option.X_test)['z_predicted']
option.Z_train = option.Z_train.T[0]
option.Z_test = option.Z_test.T[0]
print('Z_test' + str(type(option.Z_test)) + str(option.Z_test))
print('Z_test_predicted' + str(type(Z_test_predicted)) +
str(Z_test_predicted))
option.train_residual = Z_train_predicted - option.Z_train
option.test_residual = Z_test_predicted - option.Z_test
option.rmse_train_final = sqrt(
mean_squared_error(option.Z_train, Z_train_predicted))
option.rmse_test_final = sqrt(
mean_squared_error(option.Z_test, Z_test_predicted))
res = sum(np.square(option.Z_train - Z_train_predicted))
tot = sum(np.square(option.Z_train - np.mean(option.Z_train)))
n = len(option.Z_train)
p = len(option.X_train[0])
option.rsquared = 1 - res / tot
option.adj_rsquared = 1 - ((res / (n - p - 1)) / (tot / (n - 1)))
plt.figure(1)
plt.title('Residual Plot for Resistance')
plt.subplot(221)
plt.plot(Z_train_predicted, option.train_residual, 'ro')
plt.xlabel('Predicted')
plt.ylabel('Residual')
plt.subplot(222)
plt.plot(option.train_residual[0:-2], option.train_residual[1:-1],
'ro')
plt.xlabel('Residual Lag 1')
plt.ylabel('Residual')
plt.subplot(223)
plt.hist(option.train_residual, bins='auto')
plt.xlabel('Residual')
plt.ylabel('Frequency')
plt.subplot(224)
z = (option.train_residual - np.mean(option.train_residual)) / np.std(
option.train_residual)
stats.probplot(z, dist="norm", plot=plt)
plt.xlabel('Standard Quantile')
plt.ylabel('Residual Quantile')
plt.tight_layout()
plt.savefig('./' + option.folderName + '/residual_plot.png')
plt.close()
plt.figure(2)
plt.title('Parameter Tuning Plot')
plt.scatter(option.candidate_lambda, option.corresponding_rmse_mean)
plt.xlabel('Candidate Lambda')
plt.ylabel('Root Mean Squared Error')
plt.savefig('./' + option.folderName + '/parameter_tuning_plot.png')
plt.close()
print("goodness-of-fit: " + str(option.adj_rsquared))
print("training rmse: " + str(option.rmse_train_final))
print("testing rmse: " + str(option.rmse_test_final))
def decomp_plot(edge_len=25,
iterations=[1, 2, 3, 4],
ranks=[1, 5, 25, 50, 125, 130, 150, 200],
decomp='CP'):
#Params
print(ranks)
#Generate random samples
rng = check_random_state(7)
X = T.tensor(rng.normal(size=(1000, edge_len, edge_len), loc=0, scale=1))
#For plotting
n_rows = len(iterations)
n_columns = len(ranks) + 1
fig = plt.figure()
for i, _ in enumerate(iterations):
#Generate tensor
weight_img = X[i * edge_len:(i + 1) * edge_len, :, :]
ax = fig.add_subplot(n_rows, n_columns, i * n_columns + 1)
#Plot image corresponding to 3-D Tensor
ax.imshow(T.to_numpy(np.sum(weight_img, axis=0)),
cmap=plt.cm.OrRd,
interpolation='nearest')
ax.set_axis_off()
if i == 0:
ax.set_title('Original')
for j, rank in enumerate(ranks):
#Tensor decomposition, image_edge x rank (25x1, 25x5, 25x25 ...)
if decomp == 'CP':
#CP decomposition
components = parafac(weight_img, rank=rank)
ax = fig.add_subplot(n_rows, n_columns, i * n_columns + j + 2)
# Aggregate the factors for visualization
simg = np.sum(components[k] for k in range(len(components)))
ax.imshow(T.to_numpy(simg),
cmap=plt.cm.OrRd,
interpolation='nearest')
ax.text(.5,
2.0,
'{:.2f}'.format(
tensor_distance(kruskal_to_tensor(components),
weight_img)),
color='r')
# ax.set_autoscaley_on(False)
ax.set_axis_off()
else:
#Tucker decomposition
components, f = tucker(weight_img, ranks=[3, 25, rank])
#print(components.shape)
ax = fig.add_subplot(n_rows, n_columns, i * n_columns + j + 2)
# Aggregate the factors for visualization
simg = np.sum(components[k] for k in range(len(components)))
ax.imshow(T.to_numpy(simg),
cmap=plt.cm.OrRd,
interpolation='nearest')
ax.text(.5,
2.0,
'{:.2f}'.format(
tensor_distance(kruskal_to_tensor(components),
weight_img)),
color='r')
# ax.set_autoscaley_on(False)
ax.set_axis_off()
if i == 0:
ax.set_title('\n{}'.format(rank))
plt.suptitle('Tensor Decompositions')
plt.show()