def test_get_all_observation_species_counts(requests_mock):
requests_mock.get(
urljoin(INAT_NODE_API_BASE_URL, "observations/species_counts"),
[
{
"json":
load_sample_data(
"get_all_observation_species_counts_page1.json"),
"status_code":
200,
},
{
"json":
load_sample_data(
"get_all_observation_species_counts_page2.json"),
"status_code":
200,
},
],
)
response = get_all_observation_species_counts(user_login="******",
quality_grade="research")
first_result = response[0]
last_result = response[-1]
assert first_result["count"] == 19
assert first_result["taxon"]["id"] == 27805
assert first_result["taxon"]["name"] == "Notophthalmus viridescens"
assert last_result["count"] == 1
assert last_result["taxon"]["id"] == 39556
assert last_result["taxon"]["name"] == "Apalone spinifera"
def test_search(requests_mock):
"""Simulate /search results with one of each record type"""
requests_mock.get(
f'{API_V1_BASE_URL}/search',
json=load_sample_data('get_search.json'),
status_code=200,
)
response = search([8348, 6432])
taxon_result = response['results'][0]
place_result = response['results'][1]
project_result = response['results'][2]
user_result = response['results'][3]
assert all(
[isinstance(result['score'], float) for result in response['results']])
# Mainly just need to test type conversions
assert taxon_result['type'] == 'Taxon'
assert isinstance(taxon_result['record']['created_at'], datetime)
assert place_result['type'] == 'Place'
assert isinstance(place_result['record']['location'][0], float)
assert isinstance(place_result['record']['location'][1], float)
assert project_result['type'] == 'Project'
assert isinstance(project_result['record']['last_post_at'], datetime)
assert user_result['type'] == 'User'
assert isinstance(user_result['record']['created_at'], datetime)
def test_get_non_existent_observation(requests_mock):
requests_mock.get(
urljoin(INAT_NODE_API_BASE_URL, "observations"),
json=load_sample_data("get_nonexistent_observation.json"),
status_code=200,
)
with pytest.raises(ObservationNotFound):
get_observation(observation_id=99999999)
def test_to_gpx():
observations = load_sample_data('observation.json')
gpx_xml = to_gpx(observations)
gpx_dict = xmltodict.parse(gpx_xml)
point = gpx_dict['gpx']['trk']['trkseg']['trkpt']
assert point['@lat'] == '50.646894' and point['@lon'] == '4.360086'
assert point['time'] == '2018-09-05T14:06:00+0100'
assert 'Lixus bardanae' in point['cmt'] and 'Sep 05, 2018' in point['cmt']
assert point['link']['@href'].startswith('https://static.inaturalist.org/photos/')
def test_to_geojson__custom_properties():
observations = load_sample_data('observation.json')
geojson = to_geojson(observations, properties=['taxon.name', 'taxon.rank'])
feature = geojson['features'][0]
assert feature['properties']['taxon.name'] == 'Lixus bardanae'
assert feature['properties']['taxon.rank'] == 'species'
assert 'id' not in feature['properties'] and 'taxon.id' not in feature[
'properties']
assert isinstance(feature, Feature)
assert feature.is_valid
def test_create_observation(requests_mock):
requests_mock.post(
urljoin(INAT_BASE_URL, "observations.json"),
json=load_sample_data("create_observation_result.json"),
status_code=200,
)
r = create_observation(species_guess="Pieris rapae", access_token="valid token")
assert len(r) == 1 # We added a single one
assert r[0]["latitude"] is None
assert r[0]["taxon_id"] == 55626 # Pieris Rapae @ iNaturalist
def test_add_photo_to_observation(requests_mock):
requests_mock.post(
urljoin(INAT_BASE_URL, "observation_photos"),
json=load_sample_data("add_photo_to_observation.json"),
status_code=200,
)
response = add_photo_to_observation(1234, BytesIO(), access_token="token")
assert response["id"] == 1234
assert response["created_at"] == "2020-09-24T21:06:16.964-05:00"
assert response["photo"]["native_username"] == "username"
def test_upload_sounds(requests_mock):
requests_mock.post(
f'{API_V0_BASE_URL}/observation_sounds',
json=load_sample_data('post_observation_sounds.json'),
status_code=200,
)
response = upload_sounds(233946, BytesIO(), access_token='token')
assert response[0]['id'] == 233946
assert response[0]['created_at'] == '2021-05-30T17:36:40.286-05:00'
assert response[0]['sound']['file_content_type'] == 'audio/mpeg'
def test_upload_photos(requests_mock):
requests_mock.post(
f'{API_V0_BASE_URL}/observation_photos',
json=load_sample_data('post_observation_photos.json'),
status_code=200,
)
response = upload_photos(1234, BytesIO(), access_token='token')
assert response[0]['id'] == 1234
assert response[0]['created_at'] == '2020-09-24T21:06:16.964-05:00'
assert response[0]['photo']['native_username'] == 'username'
def test_get_taxa_map_layers(requests_mock):
requests_mock.get(
f'{API_V1_BASE_URL}/taxa/47588/map_layers',
json=load_sample_data('get_taxa_map_layers.json'),
status_code=200,
)
response = get_taxa_map_layers(47588)
assert response['gbif_id'] == 2820380
assert response['gbif_url'] == 'https://www.gbif.org/species/2820380'
assert response['ranges'] is False
assert response['listed_places'] is True
def test_to_geojson():
observations = load_sample_data('observation.json')
geojson = to_geojson(observations)
feature = geojson['features'][0]
assert isinstance(geojson, FeatureCollection)
assert geojson.is_valid
assert feature['geometry']['coordinates'] == [4.360086, 50.646894]
assert feature['properties']['id'] == 16227955
assert feature['properties']['taxon.id'] == 493595
assert isinstance(feature, Feature)
assert feature.is_valid
def test_get_identifications_by_id(requests_mock):
# Not much to test here, pretty much exactly the same as get_identifications()
mock_response = load_sample_data('get_identifications.json')
mock_response['results'] = [mock_response['results'][0]]
requests_mock.get(
f'{API_V1_BASE_URL}/identifications/155554373',
json=mock_response,
status_code=200,
)
response = get_identifications_by_id(155554373)
assert response['results'][0]['id'] == 155554373
def test_get_observation(requests_mock):
requests_mock.get(
urljoin(INAT_NODE_API_BASE_URL, "observations"),
json=load_sample_data("get_observation.json"),
status_code=200,
)
obs_data = get_observation(observation_id=16227955)
assert obs_data["quality_grade"] == "research"
assert obs_data["id"] == 16227955
assert obs_data["user"]["login"] == "niconoe"
assert len(obs_data["photos"]) == 2
def test_get_geojson_observations(requests_mock):
requests_mock.get(
urljoin(INAT_NODE_API_BASE_URL, "observations"),
json=load_sample_data("get_observation.json"),
status_code=200,
)
geojson = get_geojson_observations(observation_id=16227955)
feature = geojson["features"][0]
assert feature["geometry"]["coordinates"] == [4.360086, 50.646894]
assert feature["properties"]["id"] == 16227955
assert feature["properties"]["taxon_id"] == 493595
def test_create_observation(requests_mock):
requests_mock.post(
f'{API_V0_BASE_URL}/observations.json',
json=load_sample_data('create_observation_result.json'),
status_code=200,
)
response = create_observation(species_guess='Pieris rapae',
observed_on_string='2021-09-09',
access_token='valid token')
assert len(response) == 1
assert response[0]['latitude'] is None
assert response[0]['taxon_id'] == 55626
def test_get_observation_species_counts(requests_mock):
requests_mock.get(
urljoin(INAT_NODE_API_BASE_URL, "observations/species_counts"),
json=load_sample_data("get_observation_species_counts.json"),
status_code=200,
)
response = get_observation_species_counts(user_login="******",
quality_grade="research")
first_result = response["results"][0]
assert first_result["count"] == 31
assert first_result["taxon"]["id"] == 48484
assert first_result["taxon"]["name"] == "Harmonia axyridis"
def test_get_geojson_observations__custom_properties(requests_mock):
requests_mock.get(
urljoin(INAT_NODE_API_BASE_URL, "observations"),
json=load_sample_data("get_observation.json"),
status_code=200,
)
properties = ["taxon_name", "taxon_rank"]
geojson = get_geojson_observations(observation_id=16227955, properties=properties)
print(geojson)
feature = geojson["features"][0]
assert feature["properties"]["taxon_name"] == "Lixus bardanae"
assert feature["properties"]["taxon_rank"] == "species"
assert "id" not in feature["properties"] and "taxon_id" not in feature["properties"]
def test_get_all_observations(sleep, requests_mock):
# Make response appear as though there are more pages
page_1 = load_sample_data("get_observations_node_page1.json")
page_1["total_results"] = PER_PAGE_RESULTS + 1
page_2 = load_sample_data("get_observations_node_page2.json")
requests_mock.get(
urljoin(INAT_NODE_API_BASE_URL, "observations"),
[
{
"json": page_1,
"status_code": 200
},
{
"json": page_2,
"status_code": 200
},
],
)
observations = get_all_observations(id=[57754375, 57707611])
assert type(observations) is list
assert len(observations) == 2
def test_get_projects_by_id(requests_mock):
requests_mock.get(
urljoin(INAT_NODE_API_BASE_URL, "projects/8348,6432"),
json=load_sample_data("get_projects_by_id.json"),
status_code=200,
)
response = get_projects_by_id([8348, 6432])
first_result = response["results"][0]
assert response["total_results"] == len(response["results"]) == 2
assert first_result["id"] == 8348
assert first_result[
"title"] == "Tucson High Native and Invasive Species Inventory"
assert first_result["place_id"] == 96103
assert first_result["location"] == [32.2264416406, -110.9617278383]
def test_create_observation__with_datetime(post, requests_mock):
"""Just test that request param aliases work. Datetimes are converted to strings separately in
prepare_request().
"""
requests_mock.post(
f'{API_V0_BASE_URL}/observations.json',
json=load_sample_data('create_observation_result.json'),
status_code=200,
)
now = datetime.now()
create_observation(species_guess='Pieris rapae',
observed_on=now,
access_token='valid token')
request_params = post.call_args[1]['json']['observation']
assert request_params['observed_on_string'] == now
def test_get_places_autocomplete(requests_mock):
requests_mock.get(
urljoin(INAT_NODE_API_BASE_URL, "places/autocomplete"),
json=load_sample_data("get_places_autocomplete.json"),
status_code=200,
)
response = get_places_autocomplete("springbok")
result = response["results"][0]
assert response["total_results"] == len(response["results"]) == 1
assert result["id"] == 93735
assert result["name"] == "Springbok"
assert result["bbox_area"] == 0.000993854049
assert result["location"] == [-29.665119, 17.88583]
assert len(result["ancestor_place_ids"]) == 4
def test_get_taxa_by_id(requests_mock):
taxon_id = 70118
requests_mock.get(
f'{API_V1_BASE_URL}/taxa/{taxon_id}',
json=load_sample_data('get_taxa_by_id.json'),
status_code=200,
)
response = get_taxa_by_id(taxon_id)
result = response['results'][0]
assert response['total_results'] == len(response['results']) == 1
assert result['id'] == taxon_id
assert result['name'] == 'Nicrophorus vespilloides'
assert result['rank'] == 'species'
assert result['is_active'] is True
assert len(result['ancestors']) == 12
def test_get_taxa_by_id(requests_mock):
taxon_id = 70118
requests_mock.get(
urljoin(INAT_NODE_API_BASE_URL, "taxa/" + str(taxon_id)),
json=load_sample_data("get_taxa_by_id.json"),
status_code=200,
)
response = get_taxa_by_id(taxon_id)
result = response["results"][0]
assert response["total_results"] == len(response["results"]) == 1
assert result["id"] == taxon_id
assert result["name"] == "Nicrophorus vespilloides"
assert result["rank"] == "species"
assert result["is_active"] is True
assert len(result["ancestors"]) == 12
def test_update_observation(requests_mock):
requests_mock.put(
"https://www.inaturalist.org/observations/17932425.json",
json=load_sample_data("update_observation_result.json"),
status_code=200,
)
p = {
"ignore_photos": 1,
"observation": {"description": "updated description v2 !"},
}
r = update_observation(observation_id=17932425, params=p, access_token="valid token")
# If all goes well we got a single element representing the updated observation, enclosed in a list.
assert len(r) == 1
assert r[0]["id"] == 17932425
assert r[0]["description"] == "updated description v2 !"
def test_get_taxa_autocomplete(requests_mock):
requests_mock.get(
f'{API_V1_BASE_URL}/taxa/autocomplete',
json=load_sample_data('get_taxa_autocomplete.json'),
status_code=200,
)
response = get_taxa_autocomplete(q='vespi')
first_result = response['results'][0]
assert len(response['results']) == response['total_results'] == 10
assert first_result['matched_term'] == 'Vespidae'
assert first_result['id'] == 52747
assert first_result['name'] == 'Vespidae'
assert first_result['rank'] == 'family'
assert first_result['is_active'] is True
assert len(first_result['ancestor_ids']) == 11
def test_create_observation(requests_mock):
requests_mock.post(
"https://www.inaturalist.org/observations.json",
json=load_sample_data("create_observation_result.json"),
status_code=200,
)
params = {
"observation": {"species_guess": "Pieris rapae"},
}
r = create_observations(params=params, access_token="valid token")
assert len(r) == 1 # We added a single one
assert (
r[0]["latitude"] is None
) # We have the field, but it's none since we didn't submitted anything
assert r[0]["taxon_id"] == 55626 # Pieris Rapae @ iNaturalist
def test_update_observation(requests_mock):
requests_mock.put(
urljoin(INAT_BASE_URL, "observations/17932425.json"),
json=load_sample_data("update_observation_result.json"),
status_code=200,
)
params = {
"ignore_photos": 1,
"description": "updated description v2 !",
}
r = update_observation(17932425, access_token="valid token", **params)
# If all goes well we got a single element representing the updated observation, enclosed in a list.
assert len(r) == 1
assert r[0]["id"] == 17932425
assert r[0]["description"] == "updated description v2 !"
def test_get_taxa(requests_mock):
params = {'q': 'vespi', 'rank': 'genus,subgenus,species'}
requests_mock.get(
f'{API_V1_BASE_URL}/taxa?{urlencode(params)}',
json=load_sample_data('get_taxa.json'),
status_code=200,
)
response = get_taxa(q='vespi', rank=['genus', 'subgenus', 'species'])
first_result = response['results'][0]
assert len(response['results']) == response['total_results'] == 30
assert first_result['id'] == 70118
assert first_result['name'] == 'Nicrophorus vespilloides'
assert first_result['rank'] == 'species'
assert first_result['is_active'] is True
assert len(first_result['ancestor_ids']) == 14
def test_get_user_by_id(requests_mock):
user_id = 1
requests_mock.get(
f'{API_V1_BASE_URL}/users/{user_id}',
json=load_sample_data('get_user_by_id.json'),
status_code=200,
)
user = get_user_by_id(user_id)
assert user['id'] == user_id
assert user['created_at'] == datetime(2008,
3,
20,
21,
15,
42,
tzinfo=tzutc())
assert user['spam'] is False
def test_put_observation_field_values(requests_mock):
requests_mock.put(
"https://www.inaturalist.org/observation_field_values/31",
json=load_sample_data("put_observation_field_value_result.json"),
status_code=200,
)
r = put_observation_field_values(
observation_id=18166477,
observation_field_id=31, # Animal behavior
value="fouraging",
access_token="valid token",
)
assert r["id"] == 31
assert r["observation_field_id"] == 31
assert r["observation_id"] == 18166477
assert r["value"] == "fouraging"
