def tearDown(self):
self.engine.dispose()
test_db_utils.remove_db()
run_dir = Path.cwd()
err_file = run_dir.joinpath("error.log")
if err_file.exists():
print("Found leftover blastclust file... removing")
err_file.unlink()
def tearDown(self):
shutil.rmtree(results_path)
# Remove 'pdm_test_db'
test_db_utils.remove_db()
# Remove 'pdm_test_2'
exists = test_db_utils.check_if_exists(db=DB2)
if exists:
test_db_utils.remove_db(db=DB2)
def tearDown(self):
self.engine.dispose()
# Remove 'pdm_test_db'
exists = test_db_utils.check_if_exists()
if exists:
test_db_utils.remove_db()
# Remove 'pdm_test_2'
exists = test_db_utils.check_if_exists(db=DB2)
if exists:
test_db_utils.remove_db(db=DB2)
def tearDownClass(self):
test_db_utils.remove_db()
def tearDown(self):
if test_db_utils.check_if_exists(db=DB2):
test_db_utils.remove_db(db=DB2)
self.engine.dispose()
def tearDownClass(self):
if test_db_utils.check_if_exists():
test_db_utils.remove_db()
if test_db_utils.check_if_exists(db=DB2):
test_db_utils.remove_db(db=DB2)
def tearDown(self):
self.engine.dispose()
test_db_utils.remove_db()
test_db_utils.remove_db(db=DB2)
def tearDownClass(self):
# Remove 'pdm_test_db'
test_db_utils.remove_db()
def tearDownClass(self):
test_db_utils.remove_db()
shutil.rmtree(TEST_DIR)
def tearDown(self):
shutil.rmtree(output_path)
exists = test_db_utils.check_if_exists()
if exists:
test_db_utils.remove_db()
# to utilize urllib3, these two test files could be removed, and the tests
# would only need to confirm the download request status attribute = 200.
DB2 = "pdm_test_db"
# Create the main test directory in which all files will be
# created and managed. Gets created once for all tests.
test_root_dir = Path("/tmp", "pdm_utils_tests_get_db")
if test_root_dir.exists() == True:
shutil.rmtree(test_root_dir)
test_root_dir.mkdir()
# Since these tests involve creating new databases, be sure to
# remove the existing test database if it is already present.
exists = test_db_utils.check_if_exists()
if exists:
test_db_utils.remove_db()
# Within main test folder, this new folder will be created/removed
# for each test. Within the output_folder, get_db will dynamically create
# a new folder, but only if files are downloaded.
output_path = Path(test_root_dir, "output")
results_path = Path(output_path, get_db.RESULTS_FOLDER)
def get_unparsed_args(db=DB,
option=None,
download=False,
output_folder=None,
version=False,
url=""):
"""Returns list of command line arguments to convert database."""
def tearDownClass(self):
self.engine.dispose()
test_db_utils.remove_db()
def tearDown(self):
# Remove 'pdm_test_2'
exists = test_db_utils.check_if_exists(db=DB2)
if exists:
test_db_utils.remove_db(db=DB2)
def tearDownClass(self):
test_db_utils.remove_db()
shutil.rmtree(self.test_dir)
def tearDown(self):
test_db_utils.remove_db()
self.trans.rollback()
self.engine.dispose()
def tearDown(self):
test_db_utils.remove_db()
self.engine.dispose()
