def gen_gr_fiber(th,sigma,iopt,fiber='gamma'):
"""
Generate rotation matrix and
'perturb' the orientation following the
given 'distribution' function <iopt>
with the given standard deviation <sigma>
"""
from text import miller2mat, miller2mat_RT
if fiber=='gamma':
hkl, uvw = hkl_gamma()
g_casa = miller2mat(hkl, uvw)
g_sasa = nd_rot(th)
elif fiber=='alpha':
hkl, uvw = hkl_alpha()
g_casa = miller2mat(hkl, uvw)
g_sasa = rd_rot(th)
elif fiber=='eta':
hkl,uvw = hkl_eta()
g_casa = miller2mat(hkl, uvw)
g_sasa = rd_rot(th)
elif fiber=='epsilon':
xyz, uvw = hkl_epsilon()
g_casa = miller2mat_RT(uvw=uvw,xyz=xyz)
g_sasa = td_rot(th)
elif fiber=='sigma':
hkl, uvw = hkl_sigma()
g_casa = miller2mat(hkl,uvw)
g_sasa = nd_rot(th)
g = np.dot(g_casa,g_sasa)
if iopt==1: dth=gauss(mu=0., sigma=sigma)
if iopt==2: dth=expov(sigma)
if iopt==3: dth=logno(mu=0., sigma=sigma)
if iopt==4: dth=norma(mu=0., sigma=sigma)
return rot_vectang(th=dth, r=g)
def gen_gr_fiber(th,sigma,mu,iopt,tilt):
"""
Arguments
=========
th = 7.
sigma = 15.
iopt = 0 (basal//ND); 1 (basal//ED)
"""
hkl, uvw = basal_fib(iopt)
if iopt==0:
g_casa = miller2mat(hkl,uvw)
g_sasa = nd_rot(th)
elif iopt==1:
g_casa = miller2mat_RT(uvw=uvw,xyz=hkl)
g_sasa = rd_rot(th)
g = np.dot(g_casa,g_sasa)
if tilt!=0:
g_tilt = rd_rot(tilt)
g = np.dot(g_tilt.T,g)
dth = gauss(mu=mu, sigma=sigma)
return rot_vectang(th=dth, r=g)
def gen_gr_fiber(th, sigma, mu, iopt, tilt):
"""
Arguments
=========
th = 7.
sigma = 15.
iopt = 0 (basal//ND); 1 (basal//ED)
"""
hkl, uvw = basal_fib(iopt)
if iopt == 0:
g_casa = miller2mat(hkl, uvw)
g_sasa = nd_rot(th)
elif iopt == 1:
g_casa = miller2mat_RT(uvw=uvw, xyz=hkl)
g_sasa = rd_rot(th)
g = np.dot(g_casa, g_sasa)
if tilt != 0:
g_tilt = rd_rot(tilt)
g = np.dot(g_tilt.T, g)
dth = gauss(mu=mu, sigma=sigma)
return rot_vectang(th=dth, r=g)
