def apply_tagger_to_index(object_id: int, indices: List[str], fields: List[str], fact_name: str, fact_value: str, query: dict, bulk_size: int, max_chunk_bytes: int, es_timeout: int):
"""Apply Torch Tagger to index."""
try:
tagger_object = TorchTaggerObject.objects.get(pk=object_id)
tagger = tagger_object.load_tagger()
progress = ShowProgress(tagger_object.task)
ec = ElasticCore()
[ec.add_texta_facts_mapping(index) for index in indices]
searcher = ElasticSearcher(
indices = indices,
field_data = fields + ["texta_facts"], # Get facts to add upon existing ones.
query = query,
output = ElasticSearcher.OUT_RAW,
timeout = f"{es_timeout}m",
callback_progress=progress,
scroll_size = bulk_size
)
actions = update_generator(generator=searcher, ec=ec, fields=fields, fact_name=fact_name, fact_value=fact_value, tagger_object=tagger_object, tagger=tagger)
for success, info in streaming_bulk(client=ec.es, actions=actions, refresh="wait_for", chunk_size=bulk_size, max_chunk_bytes=max_chunk_bytes, max_retries=3):
if not success:
logging.getLogger(ERROR_LOGGER).exception(json.dumps(info))
tagger_object.task.complete()
return True
except Exception as e:
logging.getLogger(ERROR_LOGGER).exception(e)
error_message = f"{str(e)[:100]}..." # Take first 100 characters in case the error message is massive.
tagger_object.task.add_error(error_message)
tagger_object.task.update_status(Task.STATUS_FAILED)
def test_index_processing(self):
query_string = "inimene"
payload = {
"description":
"TestingIndexProcessing",
"fields": [TEST_FIELD],
"query":
json.dumps(
{'query': {
'match': {
'comment_content_lemmas': query_string
}
}},
ensure_ascii=False)
}
response = self.client.post(self.url, data=payload, format="json")
print_output("test_index_processing:response.data", response.data)
# Check if MLP was applied to the documents properly.
s = ElasticSearcher(indices=[self.test_index_name],
output=ElasticSearcher.OUT_DOC,
query=payload["query"])
for hit in s:
self._assert_mlp_contents(hit, TEST_FIELD)
def test_that_split_index_with_nested_field_still_has_nested_field(self):
payload = {
"description": "Random index splitting",
"indices": [{
"name": self.test_index_name
}],
"train_index": INDEX_SPLITTING_TRAIN_INDEX,
"test_index": INDEX_SPLITTING_TEST_INDEX,
"distribution": "random",
"test_size": 20
}
response = self.client.post(self.url, data=payload, format="json")
print_output(
'test_that_split_index_with_nested_field_still_has_nested_field:response.data',
response.data)
at_least_once = False
es = ElasticSearcher(
indices=[INDEX_SPLITTING_TEST_INDEX, INDEX_SPLITTING_TEST_INDEX],
field_data=[TEST_INDEX_OBJECT_FIELD],
flatten=False)
for item in es:
data = item.get(TEST_INDEX_OBJECT_FIELD, None)
if data:
self.assertTrue(isinstance(data, dict))
at_least_once = True
self.assertTrue(at_least_once)
def fact_delete_query_task(self, worker_id: int):
worker_object = DeleteFactsByQueryTask.objects.get(pk=worker_id)
try:
show_progress = ShowProgress(worker_object.task, multiplier=1)
show_progress.update_step(
'Scrolling through the indices to delete the facts.')
# Get the necessary fields.
indices: List[str] = worker_object.get_indices()
target_facts = json.loads(worker_object.facts)
scroll_size = worker_object.scroll_size
searcher = ElasticSearcher(
query=json.loads(worker_object.query),
indices=indices,
field_data=[TEXTA_TAGS_KEY],
output=ElasticSearcher.OUT_RAW,
callback_progress=show_progress,
scroll_size=scroll_size,
scroll_timeout=f"{worker_object.es_timeout}m")
ed = ElasticDocument(index=None)
actions = query_delete_actions_generator(searcher, target_facts)
ed.bulk_update(actions)
worker_object.task.complete()
worker_object.save()
return worker_id
except Exception as e:
worker_object.task.handle_failed_task(e)
raise e
def _initialize_es(self, project_pk, text_processor, callback_progress,
prediction_to_match):
# create es doc
es_doc = ElasticDocument(self.feedback_index)
# if no model objects, return nones for query and search
if not self.model_object:
return es_doc, None, None
# create mathing query
query = Query()
query.add_string_filter(query_string=self.model_object.MODEL_TYPE,
fields=["model_type"])
if self.model_object:
query.add_string_filter(query_string=str(self.model_object.pk),
fields=["model_id"])
if prediction_to_match:
query.add_string_filter(query_string=prediction_to_match,
fields=["correct_result"])
# if no index, don't create searcher object
if not self.check_index_exists():
return es_doc, None, query.query
# create es search
es_search = ElasticSearcher(indices=self.feedback_index,
query=query.query,
text_processor=text_processor,
output=ElasticSearcher.OUT_DOC_WITH_ID,
callback_progress=callback_progress)
# return objects
return es_doc, es_search, query.query
def tag_random_doc(self, request, pk=None, project_pk=None):
"""Returns prediction for a random document in Elasticsearch."""
# get tagger object
tagger_object = self.get_object()
# check if tagger exists
if not tagger_object.model.path:
raise NonExistantModelError()
if not tagger_object.model.path:
return Response({'error': 'model does not exist (yet?)'},
status=status.HTTP_400_BAD_REQUEST)
serializer = TagRandomDocSerializer(data=request.data)
serializer.is_valid(raise_exception=True)
indices = [
index["name"] for index in serializer.validated_data["indices"]
]
indices = tagger_object.get_available_or_all_indices(indices)
# retrieve tagger fields
tagger_fields = json.loads(tagger_object.fields)
if not ElasticCore().check_if_indices_exist(indices):
return Response(
{
'error':
f'One or more index from {list(indices)} do not exist'
},
status=status.HTTP_400_BAD_REQUEST)
# retrieve random document
random_doc = ElasticSearcher(indices=indices).random_documents(
size=1)[0]
# filter out correct fields from the document
random_doc_filtered = {
k: v
for k, v in random_doc.items() if k in tagger_fields
}
# apply tagger
tagger_response = apply_tagger(tagger_object.id,
random_doc_filtered,
input_type='doc')
response = {"document": random_doc, "prediction": tagger_response}
return Response(response, status=status.HTTP_200_OK)
def _get_split_documents_by_id(self, id_field, id_value, text_field):
documents = []
query = Search().query(Q("term", **{f"{id_field}.keyword": id_value})).to_dict()
es = ElasticSearcher(query=query, field_data=[id_field, text_field], output=ElasticSearcher.OUT_RAW)
for hit in es:
for document in hit:
documents.append(document)
return documents
def tag_random_doc(self, request, pk=None, project_pk=None):
"""Returns prediction for a random document in Elasticsearch."""
# get tagger object
tagger_object: RegexTaggerGroup = self.get_object()
serializer = TagRandomDocSerializer(data=request.data)
serializer.is_valid(raise_exception=True)
project_object = Project.objects.get(pk=project_pk)
indices = [
index["name"] for index in serializer.validated_data["indices"]
]
indices = project_object.get_available_or_all_project_indices(indices)
# retrieve tagger fields
fields = serializer.validated_data["fields"]
if not ElasticCore().check_if_indices_exist(
tagger_object.project.get_indices()):
return Response(
{
'error':
f'One or more index from {list(tagger_object.project.get_indices())} do not exist'
},
status=status.HTTP_400_BAD_REQUEST)
# retrieve random document
random_doc = ElasticSearcher(indices=indices).random_documents(
size=1)[0]
flattened_doc = ElasticCore(check_connection=False).flatten(random_doc)
# apply tagger
results = {
"tagger_group_id": tagger_object.pk,
"tagger_group_tag": tagger_object.description,
"result": False,
"matches": [],
"document": flattened_doc
}
final_matches = []
for field in fields:
text = flattened_doc.get(field, None)
results["document"][field] = text
matches = tagger_object.match_texts([text],
as_texta_facts=True,
field=field)
if matches:
final_matches.extend(matches)
results["result"] = True
results["matches"] = final_matches
return Response(results, status=status.HTTP_200_OK)
def post(self, request, project_pk: int):
"""Simplified search interface for making Elasticsearch queries."""
serializer = ProjectSimplifiedSearchSerializer(data=request.data)
if not serializer.is_valid():
raise SerializerNotValid(detail=serializer.errors)
project_object = get_object_or_404(Project, pk=project_pk)
self.check_object_permissions(request, project_object)
project_indices = list(project_object.get_indices())
project_fields = project_object.get_elastic_fields(path_list=True)
# test if indices exist
if not project_indices:
raise ProjectValidationFailed(detail="Project has no indices")
# test if indices are valid
if serializer.validated_data['match_indices']:
if not set(serializer.validated_data['match_indices']).issubset(set(project_indices)):
raise ProjectValidationFailed(detail=f"Index names are not valid for this project. allowed values are: {project_indices}")
# test if fields are valid
if serializer.validated_data['match_fields']:
if not set(serializer.validated_data['match_fields']).issubset(set(project_fields)):
raise ProjectValidationFailed(detail=f"Fields names are not valid for this project. allowed values are: {project_fields}")
es = ElasticSearcher(indices=project_indices, output=ElasticSearcher.OUT_DOC)
q = Query(operator=serializer.validated_data['operator'])
# if input is string, convert to list
# if unknown format, return error
match_text = serializer.validated_data['match_text']
if isinstance(match_text, list):
match_texts = [str(item) for item in match_text if item]
elif isinstance(match_text, str):
match_texts = [match_text]
else:
return Response({'error': f'match text is in unknown format: {match_text}'}, status=status.HTTP_400_BAD_REQUEST)
# add query filters
for item in match_texts:
q.add_string_filter(item, match_type=serializer.validated_data["match_type"])
# update query
es.update_query(q.query)
# retrieve results
results = es.search(size=serializer.validated_data["size"])
return Response(results, status=status.HTTP_200_OK)
def test_create_splitter_object_and_task_signal(self):
payload = {
"description": "Random index splitting",
"indices": [{
"name": self.test_index_name
}],
"train_index": INDEX_SPLITTING_TRAIN_INDEX,
"test_index": INDEX_SPLITTING_TEST_INDEX,
"distribution": "random",
"test_size": 20
}
response = self.client.post(self.url,
json.dumps(payload),
content_type='application/json')
print_output(
'test_create_splitter_object_and_task_signal:response.data',
response.data)
splitter_obj = IndexSplitter.objects.get(id=response.data['id'])
print_output("indices:", splitter_obj.get_indices())
# Check if IndexSplitter object gets created
self.assertEqual(response.status_code, status.HTTP_201_CREATED)
# Check if Task gets created
self.assertTrue(splitter_obj.task is not None)
print_output("status of IndexSplitter's Task object",
splitter_obj.task.status)
# Check if Task gets completed
self.assertEqual(splitter_obj.task.status, Task.STATUS_COMPLETED)
sleep(5)
original_count = ElasticSearcher(indices=self.test_index_name).count()
test_count = ElasticSearcher(
indices=INDEX_SPLITTING_TEST_INDEX).count()
train_count = ElasticSearcher(
indices=INDEX_SPLITTING_TRAIN_INDEX).count()
print_output('original_count, test_count, train_count',
[original_count, test_count, train_count])
class Autocomplete:
def __init__(self, project, indices, limit = 10):
self.project = project
self.limit = limit
self.es = ElasticSearcher(output=ElasticSearcher.OUT_RAW, indices=indices)
def get_fact_names(self, startswith):
query = {"aggs": {'fact': {"nested": {"path": "texta_facts"}, "aggs": {'fact': {"terms": {"field": "texta_facts.fact", "size": self.limit, "include": f"{startswith}.*"}}}}}}
self.es.update_query(query)
results = self.es.search()
facts = [a['key'] for a in results['aggregations']['fact']['fact']['buckets']]
return facts
def get_fact_values(self, startswith, fact_name):
query = {"aggs": {'str_val': {"nested": {"path": "texta_facts"}, "aggs": {'str_val': {"terms": {"field": "texta_facts.fact"}, "aggs": {"fact_values": {"terms": {"field": "texta_facts.str_val", "size": self.limit, "include": f"{startswith}.*"}}}}}}}}
self.es.update_query(query)
results = self.es.search()
facts = []
for bucket in results['aggregations']['str_val']['str_val']['buckets']:
if bucket['key'] == fact_name:
facts += [sub_bucket['key'] for sub_bucket in bucket['fact_values']['buckets']]
return facts
def get_lexicons(self, startswith):
# TODO
pass
def __add_meta_to_original_index(indices: List[str], index_fields: List[str], show_progress: ShowProgress, query: dict, scroll_size: int, elastic_wrapper: ElasticCore):
index_elastic_search = ElasticSearcher(
indices=indices,
field_data=index_fields,
callback_progress=show_progress,
query=query,
output=ElasticSearcher.OUT_RAW,
scroll_size=scroll_size
)
index_actions = add_doc_uuid(generator=index_elastic_search)
for success, info in streaming_bulk(client=elastic_wrapper.es, actions=index_actions, refresh="wait_for", chunk_size=scroll_size, max_retries=3):
if not success:
logging.getLogger(ERROR_LOGGER).exception(json.dumps(info))
def apply_search_fields_tagger_on_index(object_id: int):
search_fields_tagger = SearchFieldsTagger.objects.get(pk=object_id)
task_object = search_fields_tagger.task
"""Apply Search Fields Tagger to index."""
try:
progress = ShowProgress(task_object)
progress.update_step('scrolling search fields')
# Get the necessary fields.
indices: List[str] = search_fields_tagger.get_indices()
fields: List[str] = json.loads(search_fields_tagger.fields)
fact_name: str = search_fields_tagger.fact_name
scroll_timeout = search_fields_tagger.es_timeout
scroll_size = search_fields_tagger.bulk_size
use_breakup = search_fields_tagger.use_breakup
breakup_character = search_fields_tagger.breakup_character
ec = ElasticCore()
[ec.add_texta_facts_mapping(index) for index in indices]
searcher = ElasticSearcher(
indices=indices,
field_data=fields +
["texta_facts"], # Get facts to add upon existing ones.
query=json.loads(search_fields_tagger.query),
output=ElasticSearcher.OUT_RAW,
scroll_timeout=f"{scroll_timeout}m",
callback_progress=progress,
scroll_size=scroll_size)
actions = update_search_fields_generator(
generator=searcher,
ec=ec,
fields=fields,
fact_name=fact_name,
search_field_tagger_object=search_fields_tagger,
use_breakup=use_breakup,
breakup_character=breakup_character)
# Send the data towards Elasticsearch
ed = ElasticDocument("_all")
elastic_response = ed.bulk_update(actions=actions)
return object_id
except Exception as e:
logging.getLogger(ERROR_LOGGER).exception(e)
task_object.add_error(str(e))
task_object.update_status(Task.STATUS_FAILED)
raise e
def apply_rakun_extractor_to_index(self, object_id: int, indices: List[str],
fields: List[str], query: dict,
es_timeout: int, bulk_size: int,
fact_name: str, add_spans: bool):
"""Apply Rakun Keyword Extractor to index."""
logging.getLogger(INFO_LOGGER).info(
f"Starting task 'apply_rakun_extractor_to_index' with ID: {object_id}!"
)
rakun_extractor_object = RakunExtractor.objects.get(id=object_id)
try:
progress = ShowProgress(rakun_extractor_object.task)
# retrieve fields
field_data = fields
ec = ElasticCore()
[ec.add_texta_facts_mapping(index) for index in indices]
searcher = ElasticSearcher(
indices=indices,
field_data=field_data +
["texta_facts"], # Get facts to add upon existing ones.
query=query,
timeout=f"{es_timeout}m",
output=ElasticSearcher.OUT_RAW,
callback_progress=progress,
scroll_size=bulk_size)
keyword_detector = rakun_extractor_object.load_rakun_keyword_detector()
actions = update_generator(
keyword_detector=keyword_detector,
generator=searcher,
ec=ec,
fields=field_data,
rakun_extractor_object=rakun_extractor_object,
fact_name=fact_name,
fact_value="",
add_spans=add_spans)
# Send the data towards Elasticsearch
ed = ElasticDocument("_all")
elastic_response = ed.bulk_update(actions=actions)
rakun_extractor_object.task.complete()
return True
except Exception as e:
logging.getLogger(ERROR_LOGGER).exception(e)
error_message = f"{str(e)[:100]}..." # Take first 100 characters in case the error message is massive.
rakun_extractor_object.task.add_error(error_message)
rakun_extractor_object.task.update_status(Task.STATUS_FAILED)
def test_create_random_split(self):
payload = {
"description": "Random index splitting",
"indices": [{
"name": self.test_index_name
}],
"train_index": INDEX_SPLITTING_TRAIN_INDEX,
"test_index": INDEX_SPLITTING_TEST_INDEX,
"distribution": "random",
"test_size": 20
}
response = self.client.post(self.url, data=payload)
print_output('test_create_random_split:response.data', response.data)
splitter_obj = IndexSplitter.objects.get(id=response.data['id'])
# Assert Task gets completed
self.assertEqual(Task.STATUS_COMPLETED, Task.STATUS_COMPLETED)
print_output("Task status", Task.STATUS_COMPLETED)
sleep(5)
original_count = ElasticSearcher(indices=self.test_index_name).count()
test_count = ElasticSearcher(
indices=INDEX_SPLITTING_TEST_INDEX).count()
train_count = ElasticSearcher(
indices=INDEX_SPLITTING_TRAIN_INDEX).count()
print_output('original_count, test_count, train_count',
[original_count, test_count, train_count])
# To avoid any inconsistencies caused by rounding assume sizes are between small limits
self.assertTrue(self.is_between_limits(test_count, original_count,
0.2))
self.assertTrue(
self.is_between_limits(train_count, original_count, 0.8))
def test_applying_lang_detect_with_query(self):
mlp_field = f"{TEST_FIELD}_mlp"
query_string = "inimene"
payload = {
"description": "TestingIndexProcessing",
"field": TEST_FIELD,
"query": json.dumps({'query': {'match': {'comment_content_lemmas': query_string}}}, ensure_ascii=False)
}
response = self.client.post(self.url, data=payload, format="json")
print_output("test_applying_lang_detect_with_query:response.data", response.data)
self.assertTrue(response.status_code == status.HTTP_201_CREATED)
s = ElasticSearcher(indices=[self.test_index_name], output=ElasticSearcher.OUT_DOC, query=json.loads(payload["query"]))
for hit in s:
if TEST_FIELD in hit:
self.assertTrue(f"{mlp_field}.language.detected" in hit)
lang_value = hit[f"{mlp_field}.language.detected"]
self.assertTrue(lang_value == "et")
def apply_crf_extractor_to_index(object_id: int, indices: List[str],
mlp_fields: List[str], label_suffix: str,
query: dict, bulk_size: int,
max_chunk_bytes: int, es_timeout: int):
"""
Applies Extractor to ES index.
"""
try:
# load model
crf_object = CRFExtractorObject.objects.get(pk=object_id)
extractor = crf_object.load_extractor()
# progress
progress = ShowProgress(crf_object.task)
# add fact field if missing
ec = ElasticCore()
[ec.add_texta_facts_mapping(index) for index in indices]
# search
searcher = ElasticSearcher(
indices=indices,
field_data=mlp_fields +
["texta_facts"], # Get facts to add upon existing ones.
query=query,
output=ElasticSearcher.OUT_RAW,
timeout=f"{es_timeout}m",
callback_progress=progress,
scroll_size=bulk_size)
# create update actions
actions = update_generator(generator=searcher,
ec=ec,
mlp_fields=mlp_fields,
label_suffix=label_suffix,
object_id=object_id,
extractor=extractor)
# perform updates
try:
# as we have defined indices in actions there is no need to do it again (None)
ElasticDocument(None).bulk_update(actions)
except Exception as e:
logging.getLogger(ERROR_LOGGER).exception(e)
# all done
crf_object.task.complete()
return True
except Exception as e:
crf_object.task.handle_failed_task(e)
raise e
def extract_from_random_doc(self, request, pk=None, project_pk=None):
"""Returns prediction for a random document in Elasticsearch."""
# get rakun object
rakun_object: RakunExtractor = RakunExtractor.objects.get(pk=pk)
serializer = RakunExtractorRandomDocSerializer(data=request.data)
serializer.is_valid(raise_exception=True)
project_object = Project.objects.get(pk=project_pk)
indices = [index["name"] for index in serializer.validated_data["indices"]]
indices = project_object.get_available_or_all_project_indices(indices)
# retrieve rakun fields
fields = serializer.validated_data["fields"]
# retrieve param add_spans
add_spans = serializer.validated_data["add_spans"]
# retrieve random document
random_doc = ElasticSearcher(indices=indices).random_documents(size=1)[0]
flattened_doc = ElasticCore(check_connection=False).flatten(random_doc)
# apply rakun
results = {
"rakun_id": rakun_object.pk,
"description": rakun_object.description,
"result": False,
"keywords": [],
"document": flattened_doc
}
final_keywords = []
keyword_detector = rakun_object.load_rakun_keyword_detector()
for field in fields:
text = flattened_doc.get(field, "")
results["document"][field] = text
keywords = rakun_object.get_rakun_keywords(keyword_detector=keyword_detector, texts=[text], field_path=field, fact_name=rakun_object.description, fact_value="", add_spans=add_spans)
if keywords:
final_keywords.extend(keywords)
results["result"] = True
results["keywords"] = final_keywords
return Response(results, status=status.HTTP_200_OK)
def test_processing_with_just_tokenizer(self):
payload = {
"description": "hello there, kenobi.",
"fields": [TEST_FIELD],
"analyzers": ["tokenizer"],
"indices": [{
"name": self.test_index_name
}],
"query": json.dumps(TEST_QUERY, ensure_ascii=False)
}
response = self.client.post(self.list_url, data=payload, format="json")
print_output("test_processing_with_just_tokenizer:response.data",
response.data)
self.assertTrue(response.status_code == status.HTTP_201_CREATED)
s = ElasticSearcher(indices=[self.test_index_name], query=TEST_QUERY)
for hit in s:
new_field = f'{TEST_FIELD}_es.tokenized_text'
self.assertTrue(new_field in hit)
self.assertTrue(hit[new_field] != hit[TEST_FIELD])
def _get_negatives(self, size):
self.show_progress.update_step("scrolling negative sample")
self.show_progress.update_view(0)
# iterator for retrieving negative examples
negative_sample_iterator = ElasticSearcher(
indices=self.indices,
field_data=self.field_data,
output=ElasticSearcher.OUT_DOC,
callback_progress=self.show_progress,
text_processor=self.text_processor,
scroll_limit=int(size *
float(self.tagger_object.negative_multiplier)),
ignore_ids=self.ignore_ids,
)
# iterator to list
negative_sample = list(negative_sample_iterator)
# document doct to value string if asked
if self.join_fields:
negative_sample = self._join_fields(negative_sample)
return negative_sample
def test_normal_process_application(self):
payload = {
"description": "hello there, kenobi.",
"analyzers": ["stemmer"],
"fields": [TEST_FIELD],
"stemmer_lang": "estonian",
"indices": [{
"name": self.test_index_name
}]
}
response = self.client.post(self.list_url, data=payload, format="json")
print_output("test_normal_process_application:response.data",
response.data)
self.assertTrue(response.status_code == status.HTTP_201_CREATED)
s = ElasticSearcher(indices=[self.test_index_name])
for hit in s:
new_field = f'{TEST_FIELD}_es.stems'
self.assertTrue(new_field in hit)
self.assertTrue(hit[new_field] != hit[TEST_FIELD])
break
def apply_lang_on_indices(self, apply_worker_id: int):
worker_object = ApplyLangWorker.objects.get(pk=apply_worker_id)
task_object = worker_object.task
try:
load_mlp()
show_progress = ShowProgress(task_object, multiplier=1)
show_progress.update_step(
'scrolling through the indices to apply lang')
# Get the necessary fields.
indices: List[str] = worker_object.get_indices()
field = worker_object.field
scroll_size = 100
searcher = ElasticSearcher(query=json.loads(worker_object.query),
indices=indices,
field_data=[field],
output=ElasticSearcher.OUT_RAW,
callback_progress=show_progress,
scroll_size=scroll_size,
scroll_timeout="15m")
for index in indices:
searcher.core.add_texta_facts_mapping(index=index)
actions = process_lang_actions(generator=searcher,
field=field,
worker_id=apply_worker_id,
mlp_class=mlp)
# Send the data towards Elasticsearch
ed = ElasticDocument("_all")
elastic_response = ed.bulk_update(actions=actions)
worker_object.task.complete()
return apply_worker_id
except Exception as e:
task_object.handle_failed_task(e)
raise e
def _get_class_sample(self, query, class_name):
"""Returns sample for given class"""
# limit the docs according to max sample size & feedback size
limit = int(self.tagger_object.maximum_sample_size)
if class_name in self.feedback:
limit = limit - len(self.feedback[class_name])
logging.getLogger(INFO_LOGGER).info(
f"Collecting examples for class {self.class_display_name} (max limit = {limit})..."
)
# iterator for retrieving positive sample by query
positive_sample_iterator = ElasticSearcher(
query=query,
indices=self.indices,
field_data=self.field_data,
output=ElasticSearcher.OUT_DOC_WITH_ID,
callback_progress=self.show_progress,
scroll_limit=limit,
text_processor=self.text_processor)
positive_sample = []
# set positive ids to ignore while scrolling for negatives
for doc in positive_sample_iterator:
self.ignore_ids.add(doc["_id"])
# remove id from doc
del doc["_id"]
positive_sample.append(doc)
logging.getLogger(INFO_LOGGER).info(
f"Found {len(positive_sample)} examples for {self.class_display_name}..."
)
# If class balancing is enabled, modify number of required samples
if self.balance:
positive_sample = self._duplicate_examples(positive_sample,
class_name, limit)
# document doct to value string if asked
if self.join_fields:
positive_sample = self._join_fields(positive_sample)
return positive_sample
def apply_summarizer_on_index(self, summarizer_id: int):
summarizer_object = Summarizer.objects.get(pk=summarizer_id)
task_object = summarizer_object.task
try:
load_sumy()
show_progress = ShowProgress(task_object, multiplier=1)
show_progress.update_step('scrolling summarizer')
# Get the necessary fields.
indices: List[str] = summarizer_object.get_indices()
field_data: List[str] = json.loads(summarizer_object.fields)
ratio_data: float[str] = summarizer_object.ratio
algorithm_data: List[str] = summarizer_object.algorithm
scroll_size = 100
searcher = ElasticSearcher(query=json.loads(summarizer_object.query),
indices=indices,
field_data=field_data,
output=ElasticSearcher.OUT_RAW,
callback_progress=show_progress,
scroll_size=scroll_size,
scroll_timeout="30m")
actions = process_actions(searcher,
field_data,
ratio_data,
algorithm=algorithm_data,
summarizer_class=sumy,
summarizer_id=summarizer_id)
# Send the data towards Elasticsearch
ed = ElasticDocument("_all")
elastic_response = ed.bulk_update(actions=actions)
return summarizer_id
except Exception as e:
logging.getLogger(ERROR_LOGGER).exception(e)
task_object.add_error(str(e))
task_object.update_status(Task.STATUS_FAILED)
raise e
def test_that_lang_detect_enters_nan_token_on_bogus_fields(self):
# Set up the index with the target document that ensures NAN response.
ec = ElasticCore()
query_string = 159784984949
document_id = "test_that_lang_detect_enters_nan_token_on_bogus_fields"
ec.es.index(index=self.test_index_name, id=document_id, body={TEST_FIELD: query_string}, refresh="wait_for")
payload = {
"description": "TestingIndexProcessing",
"field": TEST_FIELD,
"query": json.dumps({'query': {'match': {TEST_FIELD: query_string}}}, ensure_ascii=False)
}
response = self.client.post(self.url, data=payload, format="json")
print_output("test_that_lang_detect_enters_nan_token_on_bogus_fields:response.data", response.data)
self.assertTrue(response.status_code == status.HTTP_201_CREATED)
s = ElasticSearcher(indices=[self.test_index_name], output=ElasticSearcher.OUT_DOC, query=json.loads(payload["query"]))
for hit in s:
self.assertTrue(hit[f"{TEST_FIELD}_mlp.language.detected"] == NAN_LANGUAGE_TOKEN_KEY)
break
# Clean up the document from the index.
ec.es.delete(index=self.test_index_name, id=document_id, refresh="wait_for")
def test_automatic_lang_detection_process(self):
payload = {
"description": "hello there, kenobi.",
"fields": [TEST_FIELD],
"analyzers": ["stemmer", "tokenizer"],
"detect_lang": True,
"indices": [{
"name": self.test_index_name
}]
}
response = self.client.post(self.list_url, data=payload, format="json")
print_output("test_automatic_lang_detection_process:response.data",
response.data)
self.assertTrue(response.status_code == status.HTTP_201_CREATED)
s = ElasticSearcher(indices=[self.test_index_name])
for hit in s:
fields = [
f'{TEST_FIELD}_es.tokenized_text', f'{TEST_FIELD}_es.stems'
]
self.assertTrue(all([field in hit for field in fields]))
self.assertTrue(
all(hit[field] != hit[TEST_FIELD] for field in fields))
break
def post(self, request, project_pk: int):
"""Executes **raw** Elasticsearch query on all project indices."""
project = get_object_or_404(Project, pk=project_pk)
self.check_object_permissions(request, project)
serializer = ProjectSearchByQuerySerializer(data=request.data)
if not serializer.is_valid():
raise SerializerNotValid(detail=serializer.errors)
indices = project.get_available_or_all_project_indices(serializer.validated_data["indices"])
if not indices:
raise ProjectValidationFailed(detail="No indices supplied and project has no indices")
es = None
if serializer.validated_data["output_type"]:
es = ElasticSearcher(indices=indices, output=serializer.validated_data["output_type"])
else:
es = ElasticSearcher(indices=indices, output=ElasticSearcher.OUT_DOC_WITH_TOTAL_HL_AGGS)
es.update_query(serializer.validated_data["query"])
results = es.search()
return Response(results, status=status.HTTP_200_OK)
def evaluate_tags_task(object_id: int,
indices: List[str],
query: dict,
es_timeout: int = 10,
scroll_size: int = 100):
try:
logging.getLogger(INFO_LOGGER).info(
f"Starting evaluator task for Evaluator with ID {object_id}.")
evaluator_object = Evaluator.objects.get(pk=object_id)
progress = ShowProgress(evaluator_object.task, multiplier=1)
# Retreieve facts and sklearn average function from the model
true_fact = evaluator_object.true_fact
pred_fact = evaluator_object.predicted_fact
true_fact_value = evaluator_object.true_fact_value
pred_fact_value = evaluator_object.predicted_fact_value
average = evaluator_object.average_function
add_individual_results = evaluator_object.add_individual_results
searcher = ElasticSearcher(indices=indices,
field_data=["texta_facts"],
query=query,
output=ElasticSearcher.OUT_RAW,
timeout=f"{es_timeout}m",
callback_progress=progress,
scroll_size=scroll_size)
# Binary
if true_fact_value and pred_fact_value:
logging.getLogger(INFO_LOGGER).info(
f"Starting binary evaluation. Comparing following fact and fact value pairs: TRUE: ({true_fact}: {true_fact_value}), PREDICTED: ({pred_fact}: {pred_fact_value})."
)
# Set the evaluation type in the model
evaluator_object.evaluation_type = "binary"
true_set = {true_fact_value, "other"}
pred_set = {pred_fact_value, "other"}
classes = ["other", true_fact_value]
n_total_classes = len(classes)
# Multilabel/multiclass
else:
logging.getLogger(INFO_LOGGER).info(
f"Starting multilabel evaluation. Comparing facts TRUE: '{true_fact}', PRED: '{pred_fact}'."
)
# Make deepcopy of the query to avoid modifying Searcher's query.
es_aggregator = ElasticAggregator(indices=indices,
query=deepcopy(query))
# Get all fact values corresponding to true and predicted facts to construct total set of labels
# needed for confusion matrix, individual score calculations and memory imprint calculations
true_fact_values = es_aggregator.facts(
size=choices.DEFAULT_MAX_AGGREGATION_SIZE,
filter_by_fact_name=true_fact)
pred_fact_values = es_aggregator.facts(
size=choices.DEFAULT_MAX_AGGREGATION_SIZE,
filter_by_fact_name=pred_fact)
true_set = set(true_fact_values)
pred_set = set(pred_fact_values)
classes = list(true_set.union(pred_set))
n_total_classes = len(classes)
# Add dummy classes for missing labels
classes.extend(
[choices.MISSING_TRUE_LABEL, choices.MISSING_PRED_LABEL])
## Set the evaluation type in the model
evaluator_object.evaluation_type = "multilabel"
classes.sort(key=lambda x: x[0].lower())
# Get number of documents in the query to estimate memory imprint
n_docs = searcher.count()
evaluator_object.task.total = n_docs
evaluator_object.task.save()
logging.getLogger(INFO_LOGGER).info(
f"Number of documents: {n_docs} | Number of classes: {len(classes)}"
)
# Get the memory buffer value from core variables
core_memory_buffer_value_gb = get_core_setting(
"TEXTA_EVALUATOR_MEMORY_BUFFER_GB")
# Calculate the value based on given ratio if the core variable is empty
memory_buffer_gb = calculate_memory_buffer(
memory_buffer=core_memory_buffer_value_gb,
ratio=EVALUATOR_MEMORY_BUFFER_RATIO,
unit="gb")
required_memory = get_memory_imprint(
n_docs=n_docs,
n_classes=len(classes),
eval_type=evaluator_object.evaluation_type,
unit="gb",
int_size=64)
enough_memory = is_enough_memory_available(
required_memory=required_memory,
memory_buffer=memory_buffer_gb,
unit="gb")
# Enable scoring after each scroll if there isn't enough memory
# for calculating the scores for the whole set of documents at once.
score_after_scroll = False if enough_memory else True
# If scoring after each scroll is enabled and scores are averaged after each scroll
# the results for each averaging function besides `micro` are imprecise
scores_imprecise = True if (score_after_scroll
and average != "micro") else False
# Store document counts, labels' class counts and indicatior if scores are imprecise
evaluator_object.document_count = n_docs
evaluator_object.n_true_classes = len(true_set)
evaluator_object.n_predicted_classes = len(pred_set)
evaluator_object.n_total_classes = n_total_classes
evaluator_object.scores_imprecise = scores_imprecise
evaluator_object.score_after_scroll = score_after_scroll
# Save model updates
evaluator_object.save()
logging.getLogger(INFO_LOGGER).info(
f"Enough available memory: {enough_memory} | Score after scroll: {score_after_scroll}"
)
# Get number of batches for the logger
n_batches = math.ceil(n_docs / scroll_size)
# Scroll and score tags
scores, bin_scores = scroll_and_score(
generator=searcher,
evaluator_object=evaluator_object,
true_fact=true_fact,
pred_fact=pred_fact,
true_fact_value=true_fact_value,
pred_fact_value=pred_fact_value,
classes=classes,
average=average,
score_after_scroll=score_after_scroll,
n_batches=n_batches,
add_individual_results=add_individual_results)
logging.getLogger(INFO_LOGGER).info(f"Final scores: {scores}")
for conn in connections.all():
conn.close_if_unusable_or_obsolete()
confusion = scores["confusion_matrix"]
confusion = np.asarray(confusion, dtype="int64")
if len(classes) <= choices.DEFAULT_MAX_CONFUSION_CLASSES:
# Delete empty rows and columns corresponding to missing pred/true labels from the confusion matrix
confusion, classes = delete_empty_rows_and_cols(confusion, classes)
scores["confusion_matrix"] = confusion.tolist()
# Generate confusion matrix plot and save it
image_name = f"{secrets.token_hex(15)}.png"
evaluator_object.plot.save(image_name,
create_confusion_plot(
scores["confusion_matrix"], classes),
save=False)
image_path = pathlib.Path(MEDIA_URL) / image_name
evaluator_object.plot.name = str(image_path)
# Add final scores to the model
evaluator_object.precision = scores["precision"]
evaluator_object.recall = scores["recall"]
evaluator_object.f1_score = scores["f1_score"]
evaluator_object.accuracy = scores["accuracy"]
evaluator_object.confusion_matrix = json.dumps(
scores["confusion_matrix"])
evaluator_object.individual_results = json.dumps(
remove_not_found(bin_scores), ensure_ascii=False)
evaluator_object.add_misclassified_examples = False
evaluator_object.save()
evaluator_object.task.complete()
return True
except Exception as e:
logging.getLogger(ERROR_LOGGER).exception(e)
error_message = f"{str(e)[:100]}..." # Take first 100 characters in case the error message is massive.
evaluator_object.task.add_error(error_message)
evaluator_object.task.update_status(Task.STATUS_FAILED)
def tag_random_doc(self, request, pk=None, project_pk=None):
"""
API endpoint for tagging a random document.
"""
logging.getLogger(INFO_LOGGER).info(
f"[Tag Random doc] Starting tag_random_doc...")
# get hybrid tagger object
hybrid_tagger_object = self.get_object()
# check if any of the models ready
if not hybrid_tagger_object.taggers.filter(
task__status=Task.STATUS_COMPLETED):
raise NonExistantModelError()
# retrieve tagger fields from the first object
first_tagger = hybrid_tagger_object.taggers.first()
tagger_fields = json.loads(first_tagger.fields)
# error if redis not available
if not get_redis_status()['alive']:
raise RedisNotAvailable(
'Redis not available. Check if Redis is running.')
serializer = TagRandomDocSerializer(data=request.data)
serializer.is_valid(raise_exception=True)
indices = [
index["name"] for index in serializer.validated_data["indices"]
]
indices = first_tagger.get_available_or_all_indices(indices)
if not ElasticCore().check_if_indices_exist(indices):
return Response(
{
'error':
f'One or more index from {list(indices)} does not exist'
},
status=status.HTTP_400_BAD_REQUEST)
# retrieve random document
random_doc = ElasticSearcher(indices=indices).random_documents(
size=1)[0]
# filter out correct fields from the document
random_doc_filtered = {
k: v
for k, v in random_doc.items() if k in tagger_fields
}
tagger_group_id = self.get_object().pk
# combine document field values into one string
combined_texts = '\n'.join(random_doc_filtered.values())
combined_texts, tags = get_mlp(tagger_group_id,
combined_texts,
lemmatize=False)
# retrieve tag candidates
tag_candidates = get_tag_candidates(tagger_group_id,
combined_texts,
ignore_tags=tags)
# get tags
tags += apply_tagger_group(tagger_group_id,
random_doc_filtered,
tag_candidates,
request,
input_type='doc')
# return document with tags
response = {"document": random_doc, "tags": tags}
return Response(response, status=status.HTTP_200_OK)
def evaluate_entity_tags_task(object_id: int,
indices: List[str],
query: dict,
es_timeout: int = 10,
scroll_size: int = 100):
try:
logging.getLogger(INFO_LOGGER).info(
f"Starting entity evaluator task for Evaluator with ID {object_id}."
)
evaluator_object = Evaluator.objects.get(pk=object_id)
progress = ShowProgress(evaluator_object.task, multiplier=1)
true_fact = evaluator_object.true_fact
pred_fact = evaluator_object.predicted_fact
add_misclassified_examples = evaluator_object.add_misclassified_examples
token_based = evaluator_object.token_based
# If the user hasn't defined a field, retrieve it automatically
if not evaluator_object.field:
es_aggregator = ElasticAggregator(indices=indices,
query=deepcopy(query))
true_fact_doc_paths = es_aggregator.facts_abstract(
key_field="fact",
value_field="doc_path",
filter_by_key=true_fact)
doc_path = true_fact_doc_paths[0]
else:
doc_path = evaluator_object.field
searcher = ElasticSearcher(indices=indices,
field_data=[doc_path, "texta_facts"],
query=query,
output=ElasticSearcher.OUT_RAW,
timeout=f"{es_timeout}m",
callback_progress=progress,
scroll_size=scroll_size)
# Get number of documents
n_docs = searcher.count()
evaluator_object.task.total = n_docs
evaluator_object.task.save()
evaluator_object.document_count = n_docs
evaluator_object.scores_imprecise = False
evaluator_object.score_after_scroll = False
evaluator_object.add_individual_results = False
# Save model updates
evaluator_object.save()
# Get number of batches for the logger
n_batches = math.ceil(n_docs / scroll_size)
scores, misclassified = scroll_and_score_entity(
searcher, evaluator_object, true_fact, pred_fact, doc_path,
token_based, n_batches, add_misclassified_examples)
logging.getLogger(INFO_LOGGER).info(f"Final scores: {scores}")
for conn in connections.all():
conn.close_if_unusable_or_obsolete()
# Generate confusion matrix plot and save it
image_name = f"{secrets.token_hex(15)}.png"
classes = ["other", true_fact]
evaluator_object.plot.save(image_name,
create_confusion_plot(
scores["confusion_matrix"], classes),
save=False)
image_path = pathlib.Path(MEDIA_URL) / image_name
evaluator_object.plot.name = str(image_path)
evaluator_object.save()
evaluator_object.task.complete()
return True
except Exception as e:
logging.getLogger(ERROR_LOGGER).exception(e)
error_message = f"{str(e)[:100]}..." # Take first 100 characters in case the error message is massive.
evaluator_object.task.add_error(error_message)
evaluator_object.task.update_status(Task.STATUS_FAILED)
