def testZPVEToken(self): # fold>>
data = FileSnippets.zpve()+"\n"
writeToTestFile(data)
tokens = GRRM.tokenizeOutFile(testFilePath())
self.assertEqual(len(tokens), 1)
self.assertEqual(tokens[0].__class__, Tokens.ZPVEToken)
def testStructureHeaderToken(self): # fold>>
data = FileSnippets.structureHeader()+"\n"
writeToTestFile(data)
tokens = GRRM.tokenizeOutFile(testFilePath())
self.assertEqual(len(tokens), 1)
self.assertEqual(tokens[0].__class__, Tokens.StructureHeaderToken)
def testHeaderTransitionToken(self): # fold>>
data = FileSnippets.headerTransition()+"\n"
writeToTestFile(data)
tokens = GRRM.tokenizeOutFile(testFilePath())
self.assertEqual(len(tokens), 1)
self.assertEqual(tokens[0].__class__, Tokens.HeaderTransitionToken)
def testNormalModesToken(self): # fold>>
data = FileSnippets.normalModes()+"\n"
writeToTestFile(data)
tokens = GRRM.tokenizeOutFile(testFilePath())
self.assertEqual(len(tokens), 1)
self.assertEqual(tokens[0].__class__, Tokens.NormalModesToken)
def parse(self, input_filename, DC_filename, dc_filename, EQ_filename, TS_filename): # fold>>
logging.debug("Input filename : "+input_filename)
logging.debug("DC filename : "+DC_filename)
logging.debug("dc filename : "+dc_filename)
logging.debug("EQ filename : "+EQ_filename)
logging.debug("TS filename : "+TS_filename)
result = {}
result["input_molecule"] = None
result["run_data"] = None
result["molecules"] = []
result["triples"] = []
result["run_data"] = []
id_to_uuid_mapper = {}
all_connections = []
input_molecule, run_data = _parseInputTokenList(GRRMInput.tokenize(input_filename))
result["input_molecule"] = input_molecule
result["run_data"] = run_data
molecules, triples, mapper = _parseDCTokenList(GRRM.tokenizeOutFile(DC_filename))
result["molecules"].extend(molecules)
result["triples"].extend(triples)
id_to_uuid_mapper.update(mapper)
molecules, triples, mapper, connections = _parsedcTokenList(GRRM.tokenizeOutFile(dc_filename))
result["molecules"].extend(molecules)
result["triples"].extend(triples)
id_to_uuid_mapper.update(mapper)
all_connections.extend(connections)
molecules, triples, mapper = _parseEQTokenList(GRRM.tokenizeOutFile(EQ_filename))
result["molecules"].extend(molecules)
result["triples"].extend(triples)
id_to_uuid_mapper.update(mapper)
molecules, triples, mapper, connections = _parseTSTokenList(GRRM.tokenizeOutFile(TS_filename))
result["molecules"].extend(molecules)
result["triples"].extend(triples)
id_to_uuid_mapper.update(mapper)
all_connections.extend(connections)
resolved_connection_list = _resolveConnections(all_connections, id_to_uuid_mapper)
connection_triples = _createConnectionTriples(resolved_connection_list)
result["triples"].extend(connection_triples)
return result
def testTokenizerEmptyFile(self): # fold>>
writeToTestFile("")
tokens = GRRM.tokenizeOutFile(testFilePath())
self.assertEqual(tokens, [])