def test_iterate(self, fasta_filename):
# Check the indexed fasta file's iterable matches that of the unindexed
# fasta file.
indexed_fasta_reader = fasta.IndexedFastaReader(
test_utils.genomics_core_testdata(fasta_filename))
unindexed_fasta_reader = fasta.UnindexedFastaReader(
test_utils.genomics_core_testdata(fasta_filename))
self.assertEqual(list(indexed_fasta_reader.iterate()),
list(unindexed_fasta_reader.iterate()))
def test_query(self):
unindexed_fasta_reader = fasta.UnindexedFastaReader(
test_utils.genomics_core_testdata('unindexed.fasta'))
with self.assertRaises(NotImplementedError):
unindexed_fasta_reader.query(ranges.make_range('chrM', 1, 5))