コード例 #1
0
ファイル: test_series.py プロジェクト: mfcabrera/thunder
 def test_normalization(self):
     rdd = self.sc.parallelize([(0, array([1, 2, 3, 4, 5], dtype='float16'))])
     data = Series(rdd, dtype='float16')
     out = data.normalize('percentile')
     # check that _dtype has been set properly *before* calling first(), b/c first() will update this
     # value even if it hasn't been correctly set
     assert_equals('float16', str(out._dtype))
     vals = out.first()[1]
     assert_equals('float16', str(vals.dtype))
     assert(allclose(vals, array([-0.42105,  0.10526,  0.63157,  1.15789,  1.68421]), atol=1e-3))
コード例 #2
0
    def test_normalization_bywindow(self):
        y = array([1, 2, 3, 4, 5], dtype='float16')
        rdd = self.sc.parallelize([(0, y)])
        data = Series(rdd, dtype='float16')
        out = data.normalize('window', window=2)
        # check that _dtype has been set properly *before* calling first(), b/c first() will update this
        # value even if it hasn't been correctly set
        assert_equals('float16', str(out._dtype))
        vals = out.first()[1]
        assert_equals('float64', str(vals.dtype))
        b_true = array([1.2,  1.4,  2.4,  3.4,  4.2])
        result_true = (y - b_true) / (b_true + 0.1)
        assert(allclose(vals, result_true, atol=1e-3))

        out = data.normalize('window', window=6)
        vals = out.first()[1]
        b_true = array([1.6,  1.8,  1.8,  1.8,  2.6])
        result_true = (y - b_true) / (b_true + 0.1)
        assert(allclose(vals, result_true, atol=1e-3))
コード例 #3
0
ファイル: test_series.py プロジェクト: mfcabrera/thunder
 def test_normalization_bymean(self):
     rdd = self.sc.parallelize([(0, array([1, 2, 3, 4, 5], dtype='float16'))])
     data = Series(rdd, dtype='float16')
     out = data.normalize('mean')
     # check that _dtype has been set properly *before* calling first(), b/c first() will update this
     # value even if it hasn't been correctly set
     assert_equals('float16', str(out._dtype))
     vals = out.first()[1]
     assert_equals('float16', str(vals.dtype))
     assert(allclose(out.first()[1],
                     array([-0.64516,  -0.32258,  0.0,  0.32258,  0.64516]), atol=1e-3))
コード例 #4
0
ファイル: test_series.py プロジェクト: mfcabrera/thunder
 def test_normalization_bymean(self):
     rdd = self.sc.parallelize([(0, array([1, 2, 3, 4, 5],
                                          dtype='float16'))])
     data = Series(rdd, dtype='float16')
     out = data.normalize('mean')
     # check that _dtype has been set properly *before* calling first(), b/c first() will update this
     # value even if it hasn't been correctly set
     assert_equals('float16', str(out._dtype))
     vals = out.first()[1]
     assert_equals('float16', str(vals.dtype))
     assert (allclose(out.first()[1],
                      array([-0.64516, -0.32258, 0.0, 0.32258, 0.64516]),
                      atol=1e-3))
コード例 #5
0
ファイル: test_series.py プロジェクト: mfcabrera/thunder
 def test_normalization(self):
     rdd = self.sc.parallelize([(0, array([1, 2, 3, 4, 5],
                                          dtype='float16'))])
     data = Series(rdd, dtype='float16')
     out = data.normalize('percentile')
     # check that _dtype has been set properly *before* calling first(), b/c first() will update this
     # value even if it hasn't been correctly set
     assert_equals('float16', str(out._dtype))
     vals = out.first()[1]
     assert_equals('float16', str(vals.dtype))
     assert (allclose(vals,
                      array([-0.42105, 0.10526, 0.63157, 1.15789, 1.68421]),
                      atol=1e-3))
コード例 #6
0
ファイル: test_series.py プロジェクト: getBioinfo/thunder
 def test_normalization(self):
     rdd = self.sc.parallelize([(0, array([1, 2, 3, 4, 5]))])
     data = Series(rdd)
     assert(allclose(data.normalize('percentile').first()[1],
                     array([-0.42105,  0.10526,  0.63157,  1.15789,  1.68421]), atol=1e-4))