def save_subtree_file():
vf, s_id, msg = self.update_or_copy_vf()
if s_id == None:
return msg
tree_type = request.json['tree_type']
if tree_type == 'newick':
suffix = 'nwk'
elif tree_type == 'nexus':
suffix = 'nxs'
elif tree_type == 'phyloxml' or tree_type == 'nexml':
suffix = 'xml'
default_filename = 'navargator_subtree.{}'.format(suffix)
selected_vars = request.json['selected_vars']
subtree = vf.tree.get_subtree(selected_vars, keep_root_branch=False)
subtree_string = vf.get_tree_string(subtree, tree_type)
if saveAs and self.web_server == False:
root = tk_root()
root.withdraw()
filename = saveAs(initialdir=os.getcwd(), initialfile=default_filename)
root.destroy()
if filename:
vf.save_tree_file(filename, subtree_string)
saved_locally, subtree_string = True, ''
else:
saved_locally = False
return json.dumps({'session_id':s_id, 'saved_locally':saved_locally, 'tree_string':subtree_string, 'filename':default_filename})
def save(self):
filename = saveAs(title="Save image as...",
filetype=(("PNG images", "*.png"),
("JPEG images", "*.jpg"), ("GIF images",
"*.gif")))
self.c.postscript(file=filename + '.eps')
img = Image.open(filename + '.eps')
img.save(filename + '.png', "png")
def save_csv():
root = tk_root()
filename = saveAs()
root.destroy()
if filename:
csvStr = request.form['csvStr'].encode('UTF-8')
if not filename.endswith('.csv'):
filename += '.csv'
with open(filename, 'wb') as f:
f.write(csvStr)
return 'Csv file saved to %s' % (filename)
else:
return 'Csv file not saved, as no filename was chosen.'
def save_svg():
svgData = request.form['svgData'].encode('UTF-8')
root = tk_root()
filename = saveAs()
root.destroy()
if filename:
if not filename.endswith('.svg'):
filename += '.svg'
with open(filename, 'wb') as f:
f.write(svgData)
ret_msg = 'Svg file saved to %s' % (filename)
else:
ret_msg = 'File not saved.'
return ret_msg
def save_btn():
try:
filename = saveAs(defaultextension='.jpg',
filetypes=(("PNG images", "*.png"),
("JPEG images", "*.jpg"), ("GIF images",
"*.gif")))
x = root.winfo_rootx() + canvas.winfo_x()
y = root.winfo_rooty() + canvas.winfo_y()
x1 = x + root.winfo_width()
y1 = y + root.winfo_height() - 50
ImageGrab.grab().crop((x, y, x1, y1)).save(filename)
messagebox.showinfo('Save As', 'image save as...' + str(filename))
except:
messagebox.showinfo('Save As', 'failed image save as...')
def save_nvrgtr_file():
vf, s_id, msg = self.update_or_copy_vf()
if s_id == None:
return msg
default_filename = 'navargator_session.nvrgtr'
include_distances = request.json['include_distances']
if saveAs and self.web_server == False:
root = tk_root()
root.withdraw()
filename = saveAs(initialdir=os.getcwd(), initialfile=default_filename)
root.destroy()
if filename:
vf.save_navargator_file(filename, include_distances=include_distances)
saved_locally, nvrgtr_str = True, ''
else:
saved_locally = False
nvrgtr_str = vf.get_navargator_string(include_distances=include_distances)
return json.dumps({'session_id':s_id, 'saved_locally':saved_locally, 'nvrgtr_as_string':nvrgtr_str, 'filename':default_filename}, ensure_ascii=False)
def save_csv():
default_filename = 'miphy_data.csv'
if self.downloads_dir != '':
# The user specified a downloads location
if not os.path.isdir(self.downloads_dir):
os.makedirs(self.downloads_dir)
if os.path.isfile(os.path.join(self.downloads_dir, default_filename)):
# File already exists, ensure it won't be overwritten
basename = default_filename[:-4]
file_ind = 2
while os.path.isfile(os.path.join(self.downloads_dir, '{}_{}.csv'.format(basename, file_ind))):
file_ind += 1
filename = os.path.join(self.downloads_dir, '{}_{}.csv'.format(basename, file_ind))
else:
filename = os.path.join(self.downloads_dir, default_filename)
else:
# The user didn't specify a downloads location; ask, or if unable default to cwd
if saveAs == None:
filename = os.path.join(os.getcwd(), default_filename)
else:
try:
root = tk_root()
root.withdraw()
filename = saveAs(initialdir=os.getcwd(), initialfile=default_filename)
root.destroy()
except:
filename = os.path.join(os.getcwd(), default_filename)
if filename:
csvStr = request.form['csvStr'].encode('UTF-8')
if not filename.lower().endswith('.csv'):
filename += '.csv'
with open(filename, 'wb') as f:
f.write(csvStr)
print('Score data saved to {}'.format(filename))
return 'Csv file saved to %s' % (filename)
else:
return 'Csv file not saved, as no filename was chosen.'
def save_svg():
default_filename = 'miphy_tree.svg'
svgData = request.form['svgData'].encode('UTF-8')
if self.downloads_dir != '':
# The user specified a downloads location
if not os.path.isdir(self.downloads_dir):
os.makedirs(self.downloads_dir)
if os.path.isfile(os.path.join(self.downloads_dir, default_filename)):
# File already exists, ensure it won't be overwritten
basename = default_filename[:-4]
file_ind = 2
while os.path.isfile(os.path.join(self.downloads_dir, '{}_{}.svg'.format(basename, file_ind))):
file_ind += 1
filename = os.path.join(self.downloads_dir, '{}_{}.svg'.format(basename, file_ind))
else:
filename = os.path.join(self.downloads_dir, default_filename)
else:
# The user didn't specify a downloads location; ask, or if unable default to cwd
if saveAs == None:
filename = os.path.join(os.getcwd(), default_filename)
else:
try:
root = tk_root()
root.withdraw()
filename = saveAs(initialdir=os.getcwd(), initialfile=default_filename)
root.destroy()
except:
filename = os.path.join(os.getcwd(), default_filename)
if filename:
if not filename.lower().endswith('.svg'):
filename += '.svg'
with open(filename, 'wb') as f:
f.write(svgData)
print('Tree image saved to {}'.format(filename))
ret_msg = 'Svg file saved to %s' % (filename)
else:
ret_msg = 'File not saved.'
return ret_msg
def save():
filename = saveAs(title="Save image as...",
filetype=(("PNG images", "*.png"),
("JPEG images", "*.jpg"), ("GIF images",
"*.gif")))
image1.save(filename)