def plate_grid(self): '''numpy.ndarray[int]: IDs of plates arranged according to their relative position of the plate within the experiment overview image (sorted row-wise by plate names) ''' n = len(self.plates) dimensions = guess_stitch_dimensions(n) cooridinates = itertools.product( range(dimensions[1]), range(dimensions[0]) ) grid = np.zeros(dimensions, dtype=int) plates = sorted(self.plates, key=lambda p: p.id) for i, (x, y) in enumerate(cooridinates): try: grid[y, x] = plates[i].id except IndexError: continue return grid
def test_guess_stitch_dimensions_73_vertical(): assert stitch.guess_stitch_dimensions(73, 'vertical') == (15, 5)
def test_guess_stitch_dimensions_22_horizontal(): assert stitch.guess_stitch_dimensions(22, 'horizontal') == (3, 8)
def test_guess_stitch_dimensions_22_vertical(): assert stitch.guess_stitch_dimensions(22, 'vertical') == (8, 3)
def test_guess_stitch_dimensions_10_horizontal(): assert stitch.guess_stitch_dimensions(10, 'horizontal') == (2, 5)
def test_guess_stitch_dimensions_10_vertical(): assert stitch.guess_stitch_dimensions(10, 'vertical') == (5, 2)
def test_guess_stitch_dimensions_9_horizontal(): assert stitch.guess_stitch_dimensions(9, 'horizontal') == (3, 3)
def test_guess_stitch_dimensions_1_vertical(): assert stitch.guess_stitch_dimensions(1, 'vertical') == (1, 1)
def test_guess_stitch_dimensions_9_vertical(): assert stitch.guess_stitch_dimensions(9, 'vertical') == (3, 3)
def test_guess_stitch_dimensions_8_horizontal(): assert stitch.guess_stitch_dimensions(8, 'horizontal') == (2, 4)
def test_guess_stitch_dimensions_8_vertical(): assert stitch.guess_stitch_dimensions(8, 'vertical') == (4, 2)
def test_guess_stitch_dimensions_6_horizontal(): assert stitch.guess_stitch_dimensions(6, 'horizontal') == (2, 3)
def test_guess_stitch_dimensions_6_vertical(): assert stitch.guess_stitch_dimensions(6, 'vertical') == (3, 2)
def test_guess_stitch_dimensions_4_horizontal(): assert stitch.guess_stitch_dimensions(4, 'horizontal') == (2, 2)
def test_guess_stitch_dimensions_73_horizontal(): assert stitch.guess_stitch_dimensions(73, 'horizontal') == (5, 15)
def test_guess_stitch_dimensions_1_horizontal(): assert stitch.guess_stitch_dimensions(1, 'horizontal') == (1, 1)
def test_guess_stitch_dimensions_4_vertical(): assert stitch.guess_stitch_dimensions(4, 'vertical') == (2, 2)